View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14605_low_2 (Length: 723)

Name: NF14605_low_2
Description: NF14605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14605_low_2
NF14605_low_2
[»] chr1 (24 HSPs)
chr1 (79-299)||(32715689-32715909)
chr1 (73-299)||(27442297-27442523)
chr1 (132-299)||(17971345-17971514)
chr1 (69-299)||(28723885-28724115)
chr1 (475-704)||(19799481-19799719)
chr1 (69-190)||(45691522-45691643)
chr1 (69-299)||(36437117-36437351)
chr1 (104-287)||(13603078-13603264)
chr1 (71-295)||(28165051-28165273)
chr1 (111-299)||(31152431-31152618)
chr1 (154-291)||(39150187-39150324)
chr1 (69-299)||(42745540-42745769)
chr1 (138-298)||(9851803-9851963)
chr1 (143-216)||(42454867-42454940)
chr1 (69-121)||(17971072-17971124)
chr1 (144-299)||(3574722-3574880)
chr1 (143-297)||(46443700-46443853)
chr1 (99-294)||(31181003-31181199)
chr1 (94-208)||(948097-948212)
chr1 (73-216)||(31003510-31003652)
chr1 (104-167)||(51120672-51120735)
chr1 (117-187)||(25130222-25130292)
chr1 (265-299)||(31003698-31003732)
chr1 (102-197)||(32800407-32800503)
[»] chr5 (18 HSPs)
chr5 (357-570)||(11128333-11128545)
chr5 (596-706)||(11128224-11128334)
chr5 (69-291)||(18705003-18705226)
chr5 (69-298)||(3629130-3629360)
chr5 (94-257)||(2225619-2225782)
chr5 (143-241)||(14417911-14418009)
chr5 (102-299)||(6688783-6688983)
chr5 (76-259)||(11690987-11691168)
chr5 (14-69)||(11128593-11128648)
chr5 (141-294)||(4449438-4449592)
chr5 (139-259)||(11983573-11983692)
chr5 (154-297)||(27193009-27193153)
chr5 (103-191)||(33432786-33432873)
chr5 (154-216)||(7735834-7735896)
chr5 (154-200)||(14917819-14917865)
chr5 (111-218)||(29948030-29948137)
chr5 (129-187)||(19090223-19090281)
chr5 (111-196)||(17686332-17686417)
[»] chr4 (13 HSPs)
chr4 (72-294)||(25376768-25376991)
chr4 (68-259)||(31707272-31707460)
chr4 (71-295)||(18838752-18838977)
chr4 (68-251)||(25382395-25382578)
chr4 (201-299)||(54863920-54864019)
chr4 (103-296)||(16572251-16572442)
chr4 (111-197)||(34326143-34326228)
chr4 (146-216)||(42312399-42312469)
chr4 (116-216)||(30615196-30615296)
chr4 (104-294)||(47231529-47231718)
chr4 (100-199)||(6087845-6087944)
chr4 (144-199)||(27184272-27184327)
chr4 (155-216)||(27032218-27032279)
[»] chr2 (26 HSPs)
chr2 (72-297)||(14200290-14200516)
chr2 (92-295)||(7011095-7011296)
chr2 (69-290)||(32872346-32872568)
chr2 (68-258)||(45723837-45724028)
chr2 (69-198)||(34309310-34309439)
chr2 (99-298)||(38496470-38496670)
chr2 (99-299)||(38214109-38214310)
chr2 (72-291)||(3269920-3270140)
chr2 (82-290)||(31404951-31405167)
chr2 (105-299)||(40503871-40504066)
chr2 (69-299)||(16781258-16781488)
chr2 (99-291)||(3268802-3268995)
chr2 (99-291)||(3269361-3269554)
chr2 (144-299)||(39063590-39063746)
chr2 (114-299)||(19285876-19286062)
chr2 (140-297)||(40442716-40442874)
chr2 (69-216)||(21794916-21795064)
chr2 (69-168)||(21229611-21229710)
chr2 (99-200)||(40664331-40664432)
chr2 (99-188)||(13027910-13027998)
chr2 (240-295)||(3711930-3711985)
chr2 (201-284)||(34262721-34262804)
chr2 (115-284)||(2287486-2287654)
chr2 (154-216)||(31365047-31365109)
chr2 (226-291)||(9045634-9045699)
chr2 (143-216)||(44173634-44173707)
[»] chr6 (13 HSPs)
chr6 (69-287)||(6657887-6658104)
chr6 (69-299)||(19780227-19780458)
chr6 (69-299)||(180336-180567)
chr6 (83-261)||(9425527-9425706)
chr6 (129-299)||(606598-606769)
chr6 (111-258)||(34837113-34837260)
chr6 (102-197)||(12143674-12143768)
chr6 (68-200)||(7926901-7927034)
chr6 (138-294)||(1856752-1856908)
chr6 (102-168)||(5428830-5428895)
chr6 (138-210)||(2950144-2950214)
chr6 (144-199)||(2443884-2443939)
chr6 (117-167)||(24789903-24789953)
[»] chr8 (17 HSPs)
chr8 (75-299)||(38209446-38209671)
chr8 (97-299)||(36408134-36408336)
chr8 (69-299)||(8251232-8251463)
chr8 (99-299)||(2207768-2207967)
chr8 (99-299)||(1445349-1445550)
chr8 (74-243)||(5923871-5924044)
chr8 (154-299)||(36054812-36054958)
chr8 (69-295)||(31658853-31659080)
chr8 (113-293)||(2520098-2520277)
chr8 (75-211)||(16890194-16890331)
chr8 (129-288)||(2152328-2152488)
chr8 (208-299)||(30112485-30112577)
chr8 (144-200)||(30653627-30653683)
chr8 (111-211)||(30870704-30870804)
chr8 (127-216)||(27518545-27518634)
chr8 (126-199)||(30105597-30105670)
chr8 (266-299)||(35431581-35431614)
[»] chr7 (27 HSPs)
chr7 (69-299)||(14568353-14568584)
chr7 (76-298)||(10599677-10599901)
chr7 (69-299)||(41508096-41508327)
chr7 (92-197)||(10409792-10409899)
chr7 (144-258)||(15033300-15033413)
chr7 (138-295)||(20949073-20949230)
chr7 (145-299)||(7307436-7307592)
chr7 (201-295)||(42935454-42935549)
chr7 (69-190)||(42935834-42935947)
chr7 (74-211)||(17757311-17757448)
chr7 (111-251)||(14658737-14658877)
chr7 (99-199)||(45072469-45072569)
chr7 (111-259)||(34470095-34470243)
chr7 (99-299)||(12506704-12506905)
chr7 (162-290)||(46341502-46341631)
chr7 (99-259)||(12485313-12485473)
chr7 (223-294)||(17757486-17757558)
chr7 (150-197)||(13777739-13777786)
chr7 (181-299)||(46101245-46101364)
chr7 (150-295)||(14650104-14650247)
chr7 (241-298)||(29808443-29808501)
chr7 (114-171)||(46101140-46101197)
chr7 (111-171)||(943259-943318)
chr7 (68-211)||(18145860-18146003)
chr7 (99-216)||(2122429-2122547)
chr7 (265-299)||(17205125-17205159)
chr7 (98-179)||(15968471-15968552)
[»] chr3 (29 HSPs)
chr3 (69-299)||(30041227-30041457)
chr3 (68-237)||(43105065-43105236)
chr3 (81-250)||(35104715-35104883)
chr3 (99-262)||(30577822-30577984)
chr3 (68-299)||(46918383-46918614)
chr3 (69-299)||(45261360-45261588)
chr3 (69-216)||(49983788-49983936)
chr3 (68-297)||(40344854-40345080)
chr3 (138-299)||(17003567-17003728)
chr3 (69-299)||(35455304-35455531)
chr3 (99-294)||(22923629-22923828)
chr3 (144-299)||(8825355-8825509)
chr3 (225-294)||(43105935-43106004)
chr3 (222-290)||(49983561-49983630)
chr3 (97-298)||(24650120-24650323)
chr3 (114-299)||(55452425-55452612)
chr3 (144-299)||(41559983-41560133)
chr3 (104-197)||(42279192-42279285)
chr3 (193-299)||(32211834-32211941)
chr3 (73-200)||(36659280-36659407)
chr3 (143-197)||(27828545-27828599)
chr3 (69-296)||(43320058-43320280)
chr3 (99-299)||(48271700-48271899)
chr3 (72-168)||(28695674-28695770)
chr3 (240-295)||(38363520-38363576)
chr3 (123-261)||(49787779-49787919)
chr3 (72-187)||(25294782-25294897)
chr3 (69-170)||(32211740-32211843)
chr3 (181-293)||(25295085-25295198)
[»] scaffold0015 (1 HSPs)
scaffold0015 (78-299)||(38763-38984)
[»] scaffold0006 (1 HSPs)
scaffold0006 (104-287)||(131735-131921)
[»] scaffold0088 (1 HSPs)
scaffold0088 (116-295)||(51273-51453)
[»] scaffold0024 (1 HSPs)
scaffold0024 (69-295)||(154340-154567)
[»] scaffold1809 (1 HSPs)
scaffold1809 (104-299)||(453-649)
[»] scaffold0836 (1 HSPs)
scaffold0836 (73-299)||(3018-3245)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 7e-88; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 79 - 299
Target Start/End: Complemental strand, 32715909 - 32715689
Alignment:
Q  79 ggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaa 178  Q
    |||||||||||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32715909 ggtcctttatataagaaaagaaaccaaaaatcatcaaaaccaagacaatcattagttgttgtaattttttgaatgtttttacaaatatatcctcataaaa 32715810  T
Q  179 atttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatgatcttaaaagttgtga 278  Q
    ||||||||||||||||||| |||||||||||||||||| | | |||||||| |||||||||||||| ||||||| |||||||||| ||||||| ||||||    
T  32715809 atttgtgaagtattaaatatacccactaatattgaaaagatcaacattaaatgagggctagaaaagacttttaaacaataaatgaccttaaaatttgtga 32715710  T
Q  279 ctttttcttataaataggacc 299  Q
    |||||||||||||||||||||    
T  32715709 ctttttcttataaataggacc 32715689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 73 - 299
Target Start/End: Original strand, 27442297 - 27442523
Alignment:
Q  73 ccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctc 172  Q
    ||||||| |||||||||| ||||||||||| |||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||    
T  27442297 ccctccgatcctttatataagaaaagaaaccaaaaattatcaaaaccaagacaatcattagttgttgcaattttttgaatgtttttacaaatatatcctc 27442396  T
Q  173 ataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaa 271  Q
    ||||||||||||||||||||||||| ||||| |||||||| ||| ||| |||||||| ||||| |||||||||||||||| || |||||  |  ||||||    
T  27442397 ataaaaatttgtgaagtattaaatatacccattaatattg-aaagaccaacattaaatgagggttagaaaagtcttttaaacactaaatatactttaaaa 27442495  T
Q  272 gttgtgactttttcttataaataggacc 299  Q
    ||||||| ||||||||||||||||||||    
T  27442496 gttgtgattttttcttataaataggacc 27442523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 132 - 299
Target Start/End: Original strand, 17971345 - 17971514
Alignment:
Q  132 agttgttgtaatttt-ttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaac 230  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||| ||| ||||||||     
T  17971345 agttgttgtaatttttttgaatgtttttacaaatataccctcttaaaaatttgtgaagtattaaatatacacactaatattgaaaagaccaacattaaat 17971444  T
Q  231 gagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaataggacc 299  Q
    ||||| |||||||||||||||| ||||||||  | |||||||||||||||||||||||||||||||||||    
T  17971445 gagggttagaaaagtcttttaaacaataaatataccttaaaagttgtgactttttcttataaataggacc 17971514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 69 - 299
Target Start/End: Original strand, 28723885 - 28724115
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    |||||||||||||| ||| ||| ||||||||||  ||||||||||| |||||| ||||| |||||  |||||||||||||||||| ||||||| ||||||    
T  28723885 tactccctccggtcatttttataagaaaagaaatcaaaaatcatcataaccaagacaatcattagcggttgtaattttttgaatgcttttacagatatac 28723984  T
Q  169 cctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatgatctta 268  Q
    ||||||||||||||||||||||||||||| | ||||||||||| |||| |   |||||||  ||||| ||||||||||||||||  ||||||||  | |     
T  28723985 cctcataaaaatttgtgaagtattaaatataaccactaatattaaaaagataaacattaattgagggttagaaaagtcttttaaataataaatgcacatt 28724084  T
Q  269 aaagttgtgactttttcttataaataggacc 299  Q
    |||||||||||||||||||||| || |||||    
T  28724085 aaagttgtgactttttcttatatattggacc 28724115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 475 - 704
Target Start/End: Complemental strand, 19799719 - 19799481
Alignment:
Q  475 caatgcaattagtattgtttgtatgacaatatatattttcacccttt-cttattatcaacatcgaagaattgaaattttttattacaataaaa-taagtg 572  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||  |||| ||| ||||||| | | |     
T  19799719 caatgcaattagtattgtt-gtatgacaatatatattctcacccttttcttgttatcaacatcgaagaattgaaaacttttgttataataaaaattaatc 19799621  T
Q  573 tgaacacataatagttcttttgtagaatcaaatttaagtataaatttagaatgcatggct-aatta----tcca---ttgttctgatctaccaaattttt 664  Q
    |||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||  || |||||    || |   ||||| ||||||| ||| |||||    
T  19799620 tgaacacaaaatagttcttttgcagaataaaatttaagtataaatttagaatgcataactaaattaatcttctattgttgttttgatctaacaatttttt 19799521  T
Q  665 agcaaggaagcttaatacattctttcaaacaatactcaat 704  Q
    ||||||||||||| |||| ||||||| |||||||||||||    
T  19799520 agcaaggaagcttcatactttctttcgaacaatactcaat 19799481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 45691522 - 45691643
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    ||||||||||| || ||| ||| |||| |||||  |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  45691522 tactccctccgatcttttttataagaagagaaatcaaaaatcatcaaaaccaagacaattattagttgttgtaattttttgaatatttttacaaatatac 45691621  T
Q  169 cctcataaaaatttgtgaagta 190  Q
    ||||||||||||||||||||||    
T  45691622 cctcataaaaatttgtgaagta 45691643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 69 - 299
Target Start/End: Original strand, 36437117 - 36437351
Alignment:
Q  69 tactccctccggtcctttatatgagaa---aagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaata 165  Q
    ||||||||||||||||| |||| ||||   || ||| |||||| ||||||||||||| | |  |||| ||||||||| ||||| ||  ||||||||||||    
T  36437117 tactccctccggtccttaatataagaagaaaaaaaaaaaaaaaccatcaaaaccaatgccagcattaattgttgtaactttttaaacatttttacaaata 36437216  T
Q  166 taccctcataaaaatttgtgaagtattaaataca-cccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatgat 264  Q
    |||||| ||| ||  |||||||  |||||||||| |||||||||||| |||| ||  |||||||| ||||| || |||||||||||||||||||| |       
T  36437217 tacccttatagaatgttgtgaaacattaaatacatcccactaatattaaaaagacagacattaaatgagggataaaaaagtcttttaagcaataactatc 36437316  T
Q  265 cttaaaagttgtgactttttcttataaataggacc 299  Q
    ||||||||||||||| |||||||||||||||||||    
T  36437317 cttaaaagttgtgacattttcttataaataggacc 36437351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 104 - 287
Target Start/End: Complemental strand, 13603264 - 13603078
Alignment:
Q  104 aaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgttttt-acaaatataccctcataaaaatttgtgaagt---attaaataca 199  Q
    ||||||||||||||| || ||||| ||||||  ||||||||||| |||||||||| |||||||||||||||||||||||||||||||   |||||||| |    
T  13603264 aaaaatcatcaaaacgaagacaatcattagtaattgtaattttt-gaatgttttttacaaatataccctcataaaaatttgtgaagtattattaaatata 13603166  T
Q  200 cccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatgatcttaaaagttgtgactttttctt 287  Q
     ||||||||||| |||| ||  || || |  || || |||||||||||||| | |||||||||  | | |||||||||||||||||||    
T  13603165 accactaatattaaaaagacaaacttttattgaaggttagaaaagtcttttgaacaataaatgcaccttaaagttgtgactttttctt 13603078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 71 - 295
Target Start/End: Original strand, 28165051 - 28165273
Alignment:
Q  71 ctccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccc 170  Q
    |||||||||||||||  ||| ||||||   || || || ||| |||||||||||||| || | || |||||||||||||||| |||||||||||||||||    
T  28165051 ctccctccggtccttattataagaaaa---accaagaaacattaaaaccaatacaatcatcaattattgtaattttttgaatatttttacaaatataccc 28165147  T
Q  171 tcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaa 269  Q
    | ||||||| |||||||  |||||||||| | || |||||| |||| |   | | | || ||||| || |||| ||||||||||||||| |  | ||| |    
T  28165148 ttataaaaaattgtgaaacattaaatacatctaccaatattaaaaagataaagacttaatgaggggtaaaaaaatcttttaagcaataactataccttta 28165247  T
Q  270 aagttgtgactttttcttataaatag 295  Q
    |||||||||| |||| ||||||||||    
T  28165248 aagttgtgacattttattataaatag 28165273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 111 - 299
Target Start/End: Complemental strand, 31152618 - 31152431
Alignment:
Q  111 atcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatat 210  Q
    |||||||||||| |||||| || ||  ||||| ||||||||| ||||||||||||||| ||||||||||  ||||||  |||||||||   |||||||||    
T  31152618 atcaaaaccaatgcaattaataattcatgtaactttttgaatatttttacaaatatacgctcataaaaa--tgtgaaacattaaatacgttcactaatat 31152521  T
Q  211 tgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataa-atgatcttaaaagttgtga-ctttttcttataaataggacc 299  Q
    | |||| |   |||||||| ||||| ||| |||||||||||||||||||    ||||||||||||||||  ||| | ||||||||||||||    
T  31152520 t-aaaagagaaacattaaatgaggggtagcaaagtcttttaagcaataacgacatcttaaaagttgtgatatttcttttataaataggacc 31152431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 154 - 291
Target Start/End: Original strand, 39150187 - 39150324
Alignment:
Q  154 tttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaag 253  Q
    ||||||||||||||||||||||||| || |||||| ||||||||||| || ||||||| |||| |   ||||||||  |||| |||||||||||||||||    
T  39150187 tttttacaaatataccctcataaaagtt-gtgaagcattaaatacactcattaatattaaaaacaaaaacattaaataaggggtagaaaagtcttttaag 39150285  T
Q  254 caataaat-gatcttaaaagttgtgactttttcttataa 291  Q
    |||||| |  | ||||||||| ||||  |||||||||||    
T  39150286 caataactacaccttaaaagtagtgatattttcttataa 39150324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 69 - 299
Target Start/End: Complemental strand, 42745769 - 42745540
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    ||||||||| |||||||  ||| |||| | |||| ||||| ||||||||||||| | || |||| |||| |||| ||||| ||  |||||||||||||||    
T  42745769 tactccctc-ggtccttgttataagaagaaaaaccaaaaaacatcaaaaccaatgctatcattaattgtcgtaactttttaaacatttttacaaatatac 42745671  T
Q  169 cctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatgatctt- 267  Q
    ||| ||| ||  |||||||  |||||||||| ||||||||||| ||||  |   | ||||| ||||| || |||||| |||||| |||||| |   |||     
T  42745670 ccttatagaatgttgtgaaacattaaatacatccactaatattaaaaaggcaatccttaaatgagggata-aaaagtattttaaacaataattatacttc 42745572  T
Q  268 aaaagttgtgactttttcttataaataggacc 299  Q
    |||| ||||||| |||||||||||||||||||    
T  42745571 aaaaattgtgacattttcttataaataggacc 42745540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 138 - 298
Target Start/End: Original strand, 9851803 - 9851963
Alignment:
Q  138 tgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggct 237  Q
    ||||| ||||||||| |||||||||||||||| | ||||||   ||||||  |||||||| ||||||||||||| |||| |   ||||||||  |||| |    
T  9851803 tgtaactttttgaatatttttacaaatatacctttataaaatactgtgaaacattaaatatacccactaatatttaaaagagaaacattaaa-tagggat 9851901  T
Q  238 agaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaataggac 298  Q
    | ||| ||| |||||||||||| |  |  |||||||||||||| ||||||||||||||||||    
T  9851902 aaaaaggtcatttaagcaataactacactttaaaagttgtgacattttcttataaataggac 9851963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 42454867 - 42454940
Alignment:
Q  143 ttttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaa 216  Q
    |||||||||| |||||| ||||||||||||||||||| || ||||| ||||||||||| |||||||||| ||||    
T  42454867 ttttttgaatatttttataaatataccctcataaaaaattatgaagcattaaatacactcactaatattaaaaa 42454940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 17971072 - 17971124
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaa 121  Q
    |||||||| ||||||||||||| ||||||||||| ||||||||||||||||||    
T  17971072 tactcccttcggtcctttatataagaaaagaaaccaaaaatcatcaaaaccaa 17971124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 299
Target Start/End: Complemental strand, 3574880 - 3574722
Alignment:
Q  144 tttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaataca--cccactaatattgaaaatacctacattaaacgagggctagaa 241  Q
    |||||||||||||||| |||||||| || ||||||| ||||||| |||||||||||  |  | ||||||| |||  |   |||||||| ||||| ||||     
T  3574880 tttttgaatgtttttataaatatactcttataaaaaattgtgaaatattaaatacattcaaattaatattaaaatgataaacattaaatgaggggtagac 3574781  T
Q  242 aagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaataggacc 299  Q
    || | |||||| |||||| |  || | |||||||||||| |||||||||||||||||||    
T  3574780 aaattttttaaacaataactacatttgaaaagttgtgacattttcttataaataggacc 3574722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 297
Target Start/End: Complemental strand, 46443853 - 46443700
Alignment:
Q  143 ttttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaa 242  Q
    |||||||||| ||||||||||||||||| |||||||| |||||||  |||| |||||  |||||| ||| |||| |   ||  |||| ||||| || |||    
T  46443853 ttttttgaatatttttacaaatatacccacataaaaa-ttgtgaaacattatatacattcactaacattaaaaaga-gaactataaatgagggataaaaa 46443756  T
Q  243 agtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaatagga 297  Q
    ||| ||||||| ||||| |  | ||||||||||||||| |||||||||||||||||    
T  46443755 agttttttaagtaataattacaccttaaaagttgtgacgttttcttataaatagga 46443700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 294
Target Start/End: Original strand, 31181003 - 31181199
Alignment:
Q  99 aaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatac 198  Q
    |||| ||||| ||||||||||||| |||| |||| |  |  ||| ||||||||| ||||||||| |||||||| ||| ||| |||||||  |||||||||    
T  31181003 aaaccaaaaaacatcaaaaccaatgcaatcattaatcata-taactttttgaatatttttacaagtatacccttatagaaaattgtgaaacattaaatac 31181101  T
Q  199 acccactaatatt-gaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaata 294  Q
    || | ||||||||  |||| |   |||||||| || |  || ||||||||||||| |||||| |  |  |||||||||||||| ||||||||||||||    
T  31181102 actcgctaatattaaaaaaaaaaaacattaaatgaagtgtaaaaaagtcttttaaacaataactataagttaaaagttgtgacattttcttataaata 31181199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 948097 - 948212
Alignment:
Q  94 aaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcat-aaaaatttgtgaagtatt 192  Q
    |||| ||| |||||| ||| ||||| ||||||||||||| ||  |  || ||||| ||| ||||| |||||||||||| || ||||||||| |||  |||    
T  948097 aaaacaaaaaaaaaaacatgaaaactaatacaattattaattaataaaactttttaaatattttttcaaatataccctgataaaaaatttgcgaaacatt 948196  T
Q  193 aaatacacccactaat 208  Q
    ||||||| ||||||||    
T  948197 aaatacatccactaat 948212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 31003510 - 31003652
Alignment:
Q  73 ccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctc 172  Q
    ||||| |||||||  ||| |||| | |||| ||||| ||||||||||||| |||| |||| |  | |||| ||||||||| |||||||||||||||| |     
T  31003510 ccctcaggtccttattataagaagaaaaaccaaaaaacatcaaaaccaatgcaatcattaatcat-gtaactttttgaatatttttacaaatataccttt 31003608  T
Q  173 ataaaaatttgtgaagtattaaatacacccactaatattgaaaa 216  Q
    ||| ||| |||| ||  ||||||||||  | |||||||| ||||    
T  31003609 atagaaaattgttaaacattaaatacattcgctaatattaaaaa 31003652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 51120672 - 51120735
Alignment:
Q  104 aaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatata 167  Q
    ||||| || ||||| ||||| |||||||| ||||||||||| ||| ||| ||||||||||||||    
T  51120672 aaaaaacaacaaaatcaatataattattaattgttgtaattctttaaatatttttacaaatata 51120735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 25130292 - 25130222
Alignment:
Q  117 accaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaa 187  Q
    |||||| || |||||| || |||||| |||||||||  ||||||||||||||| ||||| ||| |||||||    
T  25130292 accaatgcagttattaattattgtaaatttttgaatacttttacaaatataccatcatagaaaattgtgaa 25130222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 265 - 299
Target Start/End: Original strand, 31003698 - 31003732
Alignment:
Q  265 cttaaaagttgtgactttttcttataaataggacc 299  Q
    ||||||||||||||| |||||||||||||||||||    
T  31003698 cttaaaagttgtgacattttcttataaataggacc 31003732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 197
Target Start/End: Complemental strand, 32800503 - 32800407
Alignment:
Q  102 caaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaa--tataccctcataaaaatttgtgaagtattaaata 197  Q
    ||||||| |||||||| ||||| ||  |||| ||||| | | ||||||||||||||||||||  ||| | |||||| ||||||||||| |||||||||    
T  32800503 caaaaaaacatcaaaatcaatagaagcattaattgtt-tcactttttgaatgtttttacaaatgtatccactcatagaaatttgtgaaatattaaata 32800407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 5e-67; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 357 - 570
Target Start/End: Complemental strand, 11128545 - 11128333
Alignment:
Q  357 cacgaagtaaaaatatgggggttttgccatctgtttgcttggatatcgacgaacgggtaagttttatttattgaattattattgatcactattatagnnn 456  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       
T  11128545 cacgaagtaaaaataggggggttttgccatctgtttgcttggatatcgacgaacgggtaagttttatttattgaattattattgatcactattattg-aa 11128447  T
Q  457 nnnnnnnnnnnnnnnnnncaatgcaattagtattgtttgtatgacaatatatattttcaccctttcttattatcaacatcgaagaattgaaattttttat 556  Q
                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  11128446 aattaaatatatgaaaaacaatgcaattagtattgtttgtatgacaatatatattttcaccctttcttattatcaacatcgaagaattgagtttttttat 11128347  T
Q  557 tacaataaaataag 570  Q
    ||||||||||||||    
T  11128346 tacaataaaataag 11128333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 596 - 706
Target Start/End: Complemental strand, 11128334 - 11128224
Alignment:
Q  596 agaatcaaatttaagtataaatttagaatgcatggctaattatccattgttctgatctaccaaatttttagcaaggaagcttaatacattctttcaaaca 695  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11128334 agaatcaaatttaagtataaatttagaatgcatggctaattatccattgttctgatctaccaaatttttagcaaggaagcttaatacattctttcaaaca 11128235  T
Q  696 atactcaatat 706  Q
    |||||||||||    
T  11128234 atactcaatat 11128224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 69 - 291
Target Start/End: Complemental strand, 18705226 - 18705003
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    |||| ||||||||||||  ||| |||| | |||| ||||| |||| |||||||||||| ||||| ||  ||||| ||||||||| ||||||||||||||     
T  18705226 tacttcctccggtccttattataagaagaaaaaccaaaaaacatcgaaaccaatacaactattaattagtgtaactttttgaatatttttacaaatatat 18705127  T
Q  169 cctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatctt 267  Q
    ||| ||||||| |||||||| |||||||||||| | ||||||| |||| |   ||||||||  | || || |||||||||||||| ||||| |  | |||    
T  18705126 ccttataaaaagttgtgaagcattaaatacacctattaatattaaaaacaaaaacattaaataaagggtaaaaaagtcttttaagtaataactacacctt 18705027  T
Q  268 aaaagttgtgactttttcttataa 291  Q
    ||||||| |||  |||||||||||    
T  18705026 aaaagttatgatgttttcttataa 18705003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 69 - 298
Target Start/End: Original strand, 3629130 - 3629360
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    ||||||||||||||| |  ||| ||| || |||| ||||| |||||||||||||   || |||| ||||||||| ||||| ||  ||||||||||||||     
T  3629130 tactccctccggtccctattataagataaaaaaccaaaaaacatcaaaaccaatgttataattaattgttgtaactttttaaacatttttacaaatataa 3629229  T
Q  169 cctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatctt 267  Q
    ||| ||| ||  |||||||  ||||||||||  |||||||||| |||||||   |||||||  |||| || |||||||||||||| ||||| |  | |||    
T  3629230 ccttatagaatgttgtgaaacattaaatacattcactaatattaaaaatacagtcattaaattagggatacaaaagtcttttaagtaataactacacctt 3629329  T
Q  268 aaaagttgtgactttttcttataaataggac 298  Q
    |||||||||||| ||||||||||||| ||||    
T  3629330 aaaagttgtgacattttcttataaattggac 3629360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 94 - 257
Target Start/End: Complemental strand, 2225782 - 2225619
Alignment:
Q  94 aaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtatta 193  Q
    |||| |||| ||||| ||||||||| ||||||||||||| ||  ||||| ||||  ||| |||||||||||||||| ||||||||| |||||||  ||||    
T  2225782 aaaaaaaaccaaaaaacatcaaaactaatacaattattaattagtgtaacttttgaaatatttttacaaatataccttcataaaaagttgtgaaacatta 2225683  T
Q  194 aatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaat 257  Q
    |||||| ||||||||||| |||| |   ||||||||  |  | |||||||||||||||| ||||    
T  2225682 aatacaaccactaatattaaaaacaaaaacattaaataaatggtagaaaagtcttttaaacaat 2225619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 14418009 - 14417911
Alignment:
Q  143 ttttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaa 241  Q
    |||||| ||| || |||||||| |||| ||||||||| |||||||| |||||||||||||||||||||| |||||||  | ||||||| |||| |||||    
T  14418009 tttttttaatattcttacaaatttaccttcataaaaaattgtgaagcattaaatacacccactaatatttaaaatacaaatattaaacaaggggtagaa 14417911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 102 - 299
Target Start/End: Complemental strand, 6688983 - 6688783
Alignment:
Q  102 caaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacc 201  Q
    ||||||| ||| ||||||||| |||| |||| ||  ||||| |||||| ||  | ||||||||||||||||||||||| |||| ||| |||||||||||     
T  6688983 caaaaaaacattaaaaccaatgcaatcattaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtaaagcattaaatacact 6688884  T
Q  202 cacta--atattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaataggac 298  Q
     ||||  ||||| |||| |   | ||||||  |||| |||||||||||||||| |||||| |  | ||||||||||||||  ||||||||||  ||||||    
T  6688883 tactaatatattaaaaacaaacatattaaataagggatagaaaagtcttttaaacaataactacaccttaaaagttgtgatattttcttatatttaggac 6688784  T
Q  299 c 299  Q
    |    
T  6688783 c 6688783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 76 - 259
Target Start/End: Original strand, 11690987 - 11691168
Alignment:
Q  76 tccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcata 175  Q
    ||||||||||  ||| |||||  |||| |||||  |||||||  ||| ||||||||| ||| | ||| ||||||||| |||||||||||| | |||||||    
T  11690987 tccggtccttattataagaaataaaaccaaaaaatatcaaaattaatgcaattattaattgatttaactttttgaatatttttacaaatacatcctcata 11691086  T
Q  176 aaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataa 259  Q
    |||  || |||| |||||||||||| |||||| ||| |||| |   |||||||| ||||| |||  |||||||||||| |||||    
T  11691087 aaatattatgaaatattaaatacactcactaagattaaaaagagaaacattaaatgagggatag--aagtcttttaagaaataa 11691168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 11128648 - 11128593
Alignment:
Q  14 agattattctggaatattgttgttggtcttacggtggtcacttatgttaaacagtt 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||  |||||||||    
T  11128648 agattattctggaatattgttattggtcttacggtggtcacttatcctaaacagtt 11128593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 141 - 294
Target Start/End: Complemental strand, 4449592 - 4449438
Alignment:
Q  141 aattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacatt-aaacgagggctag 239  Q
    |||||||||||| ||||||||||||||||||||| | || ||||||   |||||||||| ||| ||| ||| |||| ||  ||||| ||| ||||| ||     
T  4449592 aattttttgaatatttttacaaatataccctcatgagaaattgtga--cattaaatacaaccattaagattaaaaagacaaacattgaaatgaggg-taa 4449496  T
Q  240 aaaagtcttttaagcaataaat---gatcttaaaagttgtgactttttcttataaata 294  Q
    |||||||||||||| |||||||    | ||||||| ||||||| ||||||||||||||    
T  4449495 aaaagtcttttaagaaataaatacacaccttaaaaattgtgacattttcttataaata 4449438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 259
Target Start/End: Original strand, 11983573 - 11983692
Alignment:
Q  139 gtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggcta 238  Q
    |||| |||||||||  |||||||||||||| ||  |||||||| |||||  |||||||||| ||||||||||| |||| |   |||||||| ||||| ||    
T  11983573 gtaactttttgaatacttttacaaatatactcttgtaaaaatt-gtgaaacattaaatacatccactaatattaaaaagagaaacattaaatgaggggta 11983671  T
Q  239 gaaaagtcttttaagcaataa 259  Q
     |||| |||||||| ||||||    
T  11983672 aaaaaatcttttaaacaataa 11983692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 297
Target Start/End: Complemental strand, 27193153 - 27193009
Alignment:
Q  154 tttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaag 253  Q
    |||||||||||||| | ||||||||| || ||||  |||||| | || || | ||||| |||| |  | ||||||| || || || |||||||||||||     
T  27193153 tttttacaaatatatcatcataaaaaattatgaaacattaaaaatactcagttatattaaaaagagatgcattaaatgaaggataaaaaagtcttttaaa 27193054  T
Q  254 caataaatg-atcttaaaagttgtgactttttcttataaatagga 297  Q
    |||||| |  ||||||||||||||||| ||| |||||||||||||    
T  27193053 caataactatatcttaaaagttgtgacatttccttataaatagga 27193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 191
Target Start/End: Original strand, 33432786 - 33432873
Alignment:
Q  103 aaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtat 191  Q
    |||||| |||||||| ||| ||||| |||| ||||||||||||||| ||| || |||| |||||||| ||||| |||||||||| ||||    
T  33432786 aaaaaaacatcaaaatcaagacaatcattaattgttgtaatttttt-aatattcttacgaatataccttcatagaaatttgtgatgtat 33432873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 7735896 - 7735834
Alignment:
Q  154 tttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaa 216  Q
    |||||||||||||||||| ||||||| |||| ||  ||||||||||||| |||||||| ||||    
T  7735896 tttttacaaatatacccttataaaaaattgtcaaacattaaatacacccgctaatattaaaaa 7735834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 14917865 - 14917819
Alignment:
Q  154 tttttacaaatataccctcataaaaatttgtgaagtattaaatacac 200  Q
    ||||||||||||||||||| |||||| |||||||| |||||||||||    
T  14917865 tttttacaaatataccctcgtaaaaaattgtgaagaattaaatacac 14917819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 29948030 - 29948137
Alignment:
Q  111 atcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatat 210  Q
    |||||||||||| |||| |||| ||  ||||| |||||  || ||||||||||||||| || ||||||| || | ||  ||||||||||| || ||||||    
T  29948030 atcaaaaccaatgcaatcattatttaatgtaacttttttgatatttttacaaatatactctaataaaaaattataaaacattaaatacactcattaatat 29948129  T
Q  211 tgaaaata 218  Q
    | ||||||    
T  29948130 taaaaata 29948137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 19090223 - 19090281
Alignment:
Q  129 attagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaa 187  Q
    |||| ||||||||||||||| ||| |||||| ||||||| ||||| | |||||||||||    
T  19090223 attaattgttgtaatttttttaatatttttataaatatatcctcaaagaaatttgtgaa 19090281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 17686417 - 17686332
Alignment:
Q  111 atcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaat 196  Q
    ||||||||| ||| ||| ||||||| ||  ||  |||| ||||||||||||| |||||| |||||||||  | |||||||||||||    
T  17686417 atcaaaacctataaaatcattagttattacaacgttttaaatgtttttacaagtataccttcataaaaacatatgaagtattaaat 17686332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 72 - 294
Target Start/End: Original strand, 25376768 - 25376991
Alignment:
Q  72 tccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccct 171  Q
    |||||||| |||||  ||| ||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25376768 tccctccgatccttcgtataagaaaagaagcaaaaaatcatcaaaaccaagacaatcattagttgttgtaattttttgaatgtttttacaaatataccct 25376867  T
Q  172 cataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaa 270  Q
    | |||||||||||||||||||||||| || ||| ||||||||||| | | |||||||| ||||| |||||||||||||||| |||||| |  | ||||||    
T  25376868 cttaaaaatttgtgaagtattaaatatactcacaaatattgaaaagatcaacattaaatgagggttagaaaagtcttttaaacaataattataccttaaa 25376967  T
Q  271 agttgtgactttttcttataaata 294  Q
    |  |||||||||||||| ||||||    
T  25376968 atctgtgactttttcttgtaaata 25376991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 68 - 259
Target Start/End: Original strand, 31707272 - 31707460
Alignment:
Q  68 ttactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatata 167  Q
    |||||||||| ||||||| |||| |||| | |||| ||||| || ||||||||||||| | |||| ||  ||||| ||||||||| ||||||||||||||    
T  31707272 ttactccctctggtccttaatataagaagaaaaaccaaaaaacaacaaaaccaatacactcattaattagtgtaactttttgaatatttttacaaatata 31707371  T
Q  168 ccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataa 259  Q
    ||||||||||||||| ||||| ||   ||||||||||||||||| |||| ||  ||||||||  |||| |||||||||||| ||||||||||    
T  31707372 ccctcataaaaatttatgaagcat---atacacccactaatattaaaaagacaaacattaaataaggggtagaaaagtcttctaagcaataa 31707460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 71 - 295
Target Start/End: Complemental strand, 18838977 - 18838752
Alignment:
Q  71 ctccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatg-tttttacaaatatacc 169  Q
    |||||||||||||||  ||| |||||  |||| ||||| |||||||||||||  ||| |||| ||  | ||| |||||||||  ||||||||||||||||    
T  18838977 ctccctccggtccttattataagaaataaaaccaaaaaacatcaaaaccaatgtaatcattaattaatataaatttttgaattatttttacaaatatacc 18838878  T
Q  170 ctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatctta 268  Q
    |||||||||| |||||||  |||||||||||||||||||||| |||| |    ||||||| ||||| |||||||||||||||| |||||| |  | ||||    
T  18838877 ctcataaaaaattgtgaaacattaaatacacccactaatattaaaaagataatcattaaatgaggg-tagaaaagtcttttaaacaataattatacctta 18838779  T
Q  269 aaagttgtgactttttcttataaatag 295  Q
    |||||| |||| |||||| ||||||||    
T  18838778 aaagttatgacattttctcataaatag 18838752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 68 - 251
Target Start/End: Complemental strand, 25382578 - 25382395
Alignment:
Q  68 ttactccctccggtcctttatatgagaaaagaaac-aaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatat 166  Q
    |||| |||||||||| || |||| |||| | |||| |||||| |||||||| ||| ||||| |||| || | | ||||||||||||||||| ||||||||    
T  25382578 ttacaccctccggtctttaatataagaagaaaaaccaaaaaaacatcaaaatcaagacaataattaattatggcaattttttgaatgtttt-acaaatat 25382480  T
Q  167 accctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtctttta 251  Q
    ||||| || |||||||||||||||||||| | || |||||||| | |||| ||  ||||||||  ||||||| ||||||| ||||    
T  25382479 acccttatgaaaatttgtgaagtattaaaaatactcactaatactaaaaagactaacattaaataagggctacaaaagtcattta 25382395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 201 - 299
Target Start/End: Complemental strand, 54864019 - 54863920
Alignment:
Q  201 ccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatg-atcttaaaagttgtgactttttcttataaataggacc 299  Q
    |||||||||||||||| | | |||||||| ||| | |||||||| ||||||| ||||||||| | |||||||||||||||||||||||||||||||||||    
T  54864019 ccactaatattgaaaagatcaacattaaatgagagttagaaaagccttttaaacaataaatgtaccttaaaagttgtgactttttcttataaataggacc 54863920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 103 - 296
Target Start/End: Complemental strand, 16572442 - 16572251
Alignment:
Q  103 aaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacaccc 202  Q
    |||||| ||||||||||||| | ||  ||| ||||||||| ||||| ||  |||||| ||||||||| | ||| ||  ||||||| |||||||||||       
T  16572442 aaaaaaacatcaaaaccaatgctatcgttaattgttgtaactttttaaacatttttaaaaatataccattatagaatattgtgaaatattaaataca--- 16572346  T
Q  203 actaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaatagg 296  Q
    ||||||||| |||||||   ||||||| ||||| || |||| ||| ||||||||||| |  | ||||||||||||||| ||||||||||||||||    
T  16572345 actaatattaaaaatacagtcattaaatgagggataaaaaattctgttaagcaataactacaccttaaaagttgtgacattttcttataaatagg 16572251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 34326143 - 34326228
Alignment:
Q  111 atcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaata 197  Q
    ||||||| ||| ||||| |||||||||| ||| ||||| |||||||| ||||||||| | |||||||||| |||||| |||||||||    
T  34326143 atcaaaatcaagacaatcattagttgttctaactttttaaatgtttt-acaaatatatcatcataaaaatatgtgaaatattaaata 34326228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 42312399 - 42312469
Alignment:
Q  146 tttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaa 216  Q
    ||||||| |||||||||||||||||||||||||| |||||||| || ||||| | || |||||||| ||||    
T  42312399 tttgaatatttttacaaatataccctcataaaaaattgtgaagcataaaatatatcctctaatattaaaaa 42312469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 30615296 - 30615196
Alignment:
Q  116 aaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaa 215  Q
    ||||||| ||||||||  ||||||||| ||||| ||| |||||||||||| ||| | ||||||| || ||||  |||||||||| | ||||||||| |||    
T  30615296 aaccaatgcaattattcattgttgtaactttttaaatatttttacaaatacacctttataaaaaattatgaaacattaaatacatctactaatattaaaa 30615197  T
Q  216 a 216  Q
    |    
T  30615196 a 30615196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 104 - 294
Target Start/End: Original strand, 47231529 - 47231718
Alignment:
Q  104 aaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacaccca 203  Q
    ||||| ||| |||||||||  ||| |||| ||  ||||| ||||||||| ||||||||| |||||| ||||||||| |||||||  |||||||||||       
T  47231529 aaaaaacatgaaaaccaatggaatcattaattaatgtaactttttgaatatttttacaattatacc-tcataaaaagttgtgaatcattaaatacacttg 47231627  T
Q  204 ctaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaata 294  Q
     |||||||  ||| | | ||||||||  || | || |||| |||||||| ||||||||  |||||||||||  |||| ||||||||||||||    
T  47231628 ttaatattataaaga-caacattaaataagaggtaaaaaaatcttttaaacaataaatatatcttaaaagtattgacattttcttataaata 47231718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 6087845 - 6087944
Alignment:
Q  100 aacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaataca 199  Q
    ||||| ||| |||||||||||||  | |||||  ||||| ||| |||||||||||||| || |||||||   |||| ||| ||||||| |||||||||||    
T  6087845 aacaataaaacatcaaaaccaatgaagttatttattgttataactttttgaatgttttaaccaatatacttccatagaaaattgtgaaatattaaataca 6087944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 27184272 - 27184327
Alignment:
Q  144 tttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaataca 199  Q
    ||||||||| | |||| ||||| ||| |||| ||||||||||||||||||||||||    
T  27184272 tttttgaatatctttaaaaataaaccatcattaaaatttgtgaagtattaaataca 27184327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 27032279 - 27032218
Alignment:
Q  155 ttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaa 216  Q
    ||||||||||||||||| ||| ||| ||||||| |||||||||||   ||||||||| ||||    
T  27032279 ttttacaaatatacccttatagaaagttgtgaaatattaaatacatttactaatattaaaaa 27032218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 72 - 297
Target Start/End: Original strand, 14200290 - 14200516
Alignment:
Q  72 tccctccggtcctttatatgagaaaagaaacaaaa-aatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccc 170  Q
    |||||| |||||||| ||| |||| ||||| |||| ||||||||||||||| ||||| ||||||| |  |||||||||||||||||||||||||||||||    
T  14200290 tccctctggtcctttttataagaagagaaataaaaaaatcatcaaaaccaagacaatcattagttatcctaattttttgaatgtttttacaaatataccc 14200389  T
Q  171 tcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatg-atcttaa 269  Q
    ||||||||||||||||||||||||||| || ||||||||||||||| | | |||||||| ||||| || |||||||||||||  |||||||| |||||||    
T  14200390 tcataaaaatttgtgaagtattaaatatactcactaatattgaaaagatcaacattaaatgagggttaaaaaagtcttttaaataataaatgtatcttaa 14200489  T
Q  270 aagttgtgactttttcttataaatagga 297  Q
    |||||||||| |||||||||||||||||    
T  14200490 aagttgtgac-ttttcttataaatagga 14200516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 92 - 295
Target Start/End: Complemental strand, 7011296 - 7011095
Alignment:
Q  92 agaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaatttttt-gaatgtttttacaaatataccctcataaaaatttgtgaagta 190  Q
    |||||| ||| ||||||||||||||| ||| ||||| | ||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  7011296 agaaaaaaaataaaaaatcatcaaaatcaagacaatcagtagttgttgcaatttttttgaatgtttttacaaatatactctcataaaaatttgtgaagta 7011197  T
Q  191 ttaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatg-atcttaaaagttgtgactttttcttat 289  Q
    ||||||| ||||||||||||||||||     | |||||| ||||| |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||    
T  7011196 ttaaatatacccactaatattgaaaa----gatattaaatgagggttagaaaagtcttttaaacaataaatgtatcttaaaaattgtgactttttcttat 7011101  T
Q  290 aaatag 295  Q
    ||||||    
T  7011100 aaatag 7011095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 69 - 290
Target Start/End: Complemental strand, 32872568 - 32872346
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    |||||| |||| |||||| ||| ||||||||||| ||| |||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||    
T  32872568 tactccatccgatcctttttataagaaaagaaaccaaagatcatcaaaaccaagacaatcattagtggttgtaattttttgaatgtttttacaaatatac 32872469  T
Q  169 cctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatg-atctt 267  Q
    ||||||||||| ||||||||||||||||| ||||||||||||| |||  ||  ||||||||  |||| | |||||||||||||| ||||||||| | |||    
T  32872468 cctcataaaaaattgtgaagtattaaatatacccactaatattaaaaggacaaacattaaattagggttggaaaagtcttttaaacaataaatgtaactt 32872369  T
Q  268 aaaagttgtgactttttcttata 290  Q
    ||||||    |||||||||||||    
T  32872368 aaaagtcacaactttttcttata 32872346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 68 - 258
Target Start/End: Original strand, 45723837 - 45724028
Alignment:
Q  68 ttactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatata 167  Q
    |||||||||| | |||||||||| ||||||||||| |||||||||||||||||| ||||| |||||||| | |||||||||||||||| |||||||||||    
T  45723837 ttactccctctgatcctttatataagaaaagaaaccaaaaatcatcaaaaccaaaacaatcattagttgctctaattttttgaatgttgttacaaatata 45723936  T
Q  168 ccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacga-gggctagaaaagtcttttaagcaata 258  Q
     | |||||||||||| | |||||||||||| ||| |||||||||||||| ||| | |||||| || |||||| |||| |||||||| |||||    
T  45723937 tcttcataaaaatttataaagtattaaatatacctactaatattgaaaagaccaatattaaatgaggggctaaaaaaatcttttaaacaata 45724028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 69 - 198
Target Start/End: Complemental strand, 34309439 - 34309310
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    |||||||| ||||||||| ||| |||||| |||| |||||||||||||| ||| ||||| ||||||  ||||||||||||||||| ||||||||||||||    
T  34309439 tactcccttcggtcctttttataagaaaataaaccaaaaatcatcaaaatcaagacaatcattagtgattgtaattttttgaatgcttttacaaatatac 34309340  T
Q  169 cctcataaaaatttgtgaagtattaaatac 198  Q
    ||||||||||||||||||||||||||||||    
T  34309339 cctcataaaaatttgtgaagtattaaatac 34309310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 99 - 298
Target Start/End: Complemental strand, 38496670 - 38496470
Alignment:
Q  99 aaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatac 198  Q
    |||| ||||| ||||||||||||| | || |||| ||  ||||| ||||||||| |||||||||||||||||| |||||||| || |||  |||||||||    
T  38496670 aaaccaaaaaacatcaaaaccaatgctatcattaattagtgtaactttttgaatatttttacaaatataccctgataaaaatgtgcgaaacattaaatac 38496571  T
Q  199 acccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaatagga 297  Q
    ||| ||||||||| |||||||  || |||||  |||| |||||| ||||||||| |||||| |  | ||||||| || |||| |||||||||||||||||    
T  38496570 acctactaatattaaaaatacaaacgttaaataaggggtagaaaggtcttttaaacaataactataccttaaaaattctgacattttcttataaatagga 38496471  T
Q  298 c 298  Q
    |    
T  38496470 c 38496470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 99 - 299
Target Start/End: Complemental strand, 38214310 - 38214109
Alignment:
Q  99 aaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatac 198  Q
    |||| ||||| |||||||||||||||||| |||  ||   | || ||||||||| |||||||||||||| ||||||||||| |||||||  |||||||||    
T  38214310 aaaccaaaaaacatcaaaaccaatacaatcattgattaaagaaactttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaatac 38214211  T
Q  199 acccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaatagga 297  Q
    ||  ||||||||| |||| |     |||||| ||||| || ||||||||||||| ||||||||  | |||||||||||||| |||||||||||||| |||    
T  38214210 acatactaatattaaaaagagaagtattaaatgagggatataaaagtcttttaaacaataaatacaccttaaaagttgtgaatttttcttataaattgga 38214111  T
Q  298 cc 299  Q
    ||    
T  38214110 cc 38214109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 72 - 291
Target Start/End: Complemental strand, 3270140 - 3269920
Alignment:
Q  72 tccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccct 171  Q
    ||||| ||||||||  ||| |||| | |||| ||||| |||||||| |||| ||| ||||| ||  | ||| ||||||||| ||||||||||||||||||    
T  3270140 tcccttcggtccttattataagaagaaaaaccaaaaaacatcaaaatcaatgcaactattaattagtataactttttgaatatttttacaaatataccct 3270041  T
Q  172 cataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaa 270  Q
     ||||||| ||||||||  ||||||||||| | ||||||| |||| |   ||||||||  |||| ||||||||||||||| ||||||| |  | ||||||    
T  3270040 tataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaaataaggggtagaaaagtcttttaggcaataactacaccttaaa 3269941  T
Q  271 agttgtgactttttcttataa 291  Q
    ||||||||  |||||||||||    
T  3269940 agttgtgatattttcttataa 3269920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 82 - 290
Target Start/End: Complemental strand, 31405167 - 31404951
Alignment:
Q  82 cctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaa--------ttttttgaatgtttttacaaatataccctca 173  Q
    ||||| ||| ||||||||||  ||||||| |||||||||| |||||||||| | |||||||        |||||||||| |||||||||||||| |||||    
T  31405167 cctttttataagaaaagaaattaaaaatcttcaaaaccaagacaattattaatggttgtaaattgtaatttttttgaatatttttacaaatatatcctca 31405068  T
Q  174 taaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatg-atcttaaaag 272  Q
    || |||||| |||||||||||||| |  |||||||||| |||| ||  | |||||| ||||| ||||||||||||||||  |||||||| | |||||||     
T  31405067 tagaaatttatgaagtattaaatatatgcactaatattaaaaagacaaatattaaatgagggttagaaaagtcttttaaaaaataaatgtaccttaaaa- 31404969  T
Q  273 ttgtgactttttcttata 290  Q
     | |||||||||||||||    
T  31404968 atatgactttttcttata 31404951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 105 - 299
Target Start/End: Complemental strand, 40504066 - 40503871
Alignment:
Q  105 aaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccac 204  Q
    |||| |||||||| ||||  ||| |||| ||  |||||| |||||||| |||||||| ||||||||||||||||| |||||||| ||||||| |||| ||    
T  40504066 aaaaacatcaaaatcaatgtaatcattaattagtgtaatcttttgaatatttttacagatataccctcataaaaagttgtgaagcattaaatgcacctac 40503967  T
Q  205 taatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaataggacc 299  Q
    ||||||| |||| ||  ||| ||||  |||| || |||||| |||||| |||||| |  | ||||||||||||||| ||||||||||||| |||||    
T  40503966 taatattaaaaagacaaacaataaataaggggtataaaagttttttaaacaataattacaccttaaaagttgtgacattttcttataaatgggacc 40503871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 69 - 299
Target Start/End: Complemental strand, 16781488 - 16781258
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    ||||||||||||||||| |||| |||| | |||| ||| | |||||||||||||  ||| |||| ||  | |||||||||||||  || |||||||||||    
T  16781488 tactccctccggtccttaatataagaagaaaaaccaaataacatcaaaaccaatgtaatcattaattagtctaattttttgaataattatacaaatatac 16781389  T
Q  169 cctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatgatctta 268  Q
    |||||| |||| | |||||  |||||||||||| |||||||||  ||| ||  |||||||   |||  |||||||||||||||| || ||| |   | |     
T  16781388 cctcattaaaaatggtgaaacattaaatacacctactaatattacaaagacaaacattaactaaggcgtagaaaagtcttttaaacattaattatacctt 16781289  T
Q  269 aaagttgtgactttttcttataaataggacc 299  Q
    |||||||||||||||||||||||||| ||||    
T  16781288 aaagttgtgactttttcttataaatatgacc 16781258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 99 - 291
Target Start/End: Complemental strand, 3268995 - 3268802
Alignment:
Q  99 aaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatac 198  Q
    |||| ||||| |||||||| |||| ||| ||||| ||  | ||| ||||||||| |||||||||||||||||| ||||||| ||||||||  ||||||||    
T  3268995 aaaccaaaaaacatcaaaatcaatgcaactattaattagtataactttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatac 3268896  T
Q  199 acccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataa 291  Q
    ||| | ||||||| |||| |   ||||||||  |||| ||||||||||||||| ||||||| |  | ||||||||||||||  |||||||||||    
T  3268895 acctattaatattaaaaacaaaaacattaaataaggggtagaaaagtcttttaggcaataactacaccttaaaagttgtgatattttcttataa 3268802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 99 - 291
Target Start/End: Complemental strand, 3269554 - 3269361
Alignment:
Q  99 aaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatac 198  Q
    |||| ||||| |||||||| |||| ||| ||||| ||  | ||| ||||||||| |||||||||||||||||| ||||||| ||||||||  ||||||||    
T  3269554 aaaccaaaaaacatcaaaatcaatgcaactattaattagtataactttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatac 3269455  T
Q  199 acccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataa 291  Q
    ||| | ||||||| |||| |   ||||||||  |||| ||||||||||||||| ||||||| |  | ||||||||||||||  |||||||||||    
T  3269454 acctattaatattaaaaacaaaaacattaaataaggggtagaaaagtcttttaggcaataactacaccttaaaagttgtgatattttcttataa 3269361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 144 - 299
Target Start/End: Original strand, 39063590 - 39063746
Alignment:
Q  144 tttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaa 243  Q
    ||||||||| |||||||||||||| ||||||||||| |||||||  ||||||||||| |||||||||| |||| |     |||||| |||   || ||||    
T  39063590 tttttgaatatttttacaaatataacctcataaaaaattgtgaaacattaaatacacacactaatattaaaaagagaagtattaaatgagcaatataaaa 39063689  T
Q  244 gtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaataggacc 299  Q
    ||||||||| ||||||||  | |||||||||||||| |||||||||||||| |||||    
T  39063690 gtcttttaaacaataaatacaccttaaaagttgtgaatttttcttataaattggacc 39063746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 114 - 299
Target Start/End: Complemental strand, 19286062 - 19285876
Alignment:
Q  114 aaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattga 213  Q
    ||||||||||||||||||| |||||  || ||||| |||  ||||||||||||| ||  ||| ||| |||||||  ||||||||||  ||||||||||||    
T  19286062 aaaaccaatacaattattaattgttacaactttttaaataattttacaaatatatccctatagaaagttgtgaaccattaaatacattcactaatattga 19285963  T
Q  214 aaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaataggacc 299  Q
    ||| ||  | |||||| || || || |||||||||||| ||||||| |  | ||||||| |||||||  || |||||||||||||||    
T  19285962 aaagacaaatattaaatgaaggatataaaagtcttttatgcaataactacaccttaaaacttgtgacaattacttataaataggacc 19285876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 140 - 297
Target Start/End: Complemental strand, 40442874 - 40442716
Alignment:
Q  140 taattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctag 239  Q
    |||| |||||||| |||||| | ||||||||| ||||||| |||||||| ||||||| |||| ||||||||| |||| |   ||| ||||  |||| ||     
T  40442874 taatcttttgaatatttttatagatatacccttataaaaagttgtgaagcattaaatgcacctactaatattaaaaagataaacaataaataaggggtat 40442775  T
Q  240 aaaagtcttttaagcaataaatg-atcttaaaagttgtgactttttcttataaatagga 297  Q
    |||||| |||||| |||||| |  | ||||||||||||||| |||||||||||||||||    
T  40442774 aaaagttttttaaacaataattacaccttaaaagttgtgacattttcttataaatagga 40442716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 69 - 216
Target Start/End: Complemental strand, 21795064 - 21794916
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    |||||||||||||||||  ||| |||||  |||  ||||| |||||||||||||| ||| |||  ||   | || ||||||||| |||||||||||||||    
T  21795064 tactccctccggtccttattataagaaacaaaatcaaaaaacatcaaaaccaatataatcattgattaaagaaactttttgaatatttttacaaatatac 21794965  T
Q  169 cctcata-aaaatttgtgaagtattaaatacacccactaatattgaaaa 216  Q
    ||||||| |||| |||||||  ||||||||||| |||||||||| ||||    
T  21794964 cctcataaaaaaattgtgaaacattaaatacacacactaatattaaaaa 21794916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 21229710 - 21229611
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    |||||| ||||||||||  ||| |||| | |||| ||||||||| ||||||||| |||| |||| || |||||| ||||||||| |||||||||||||||    
T  21229710 tactccatccggtccttattataagaagaaaaaccaaaaatcattaaaaccaatgcaatcattaattattgtaactttttgaatatttttacaaatatac 21229611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 40664432 - 40664331
Alignment:
Q  99 aaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatac 198  Q
    |||| ||||| |||||||||||||||||| |||| ||   | || ||||||||| || |||||||||||||||| |||||| |||||||  |||||||||    
T  40664432 aaaccaaaaaacatcaaaaccaatacaatcattaattaaagaaactttttgaatattcttacaaatataccctcgtaaaaaattgtgaaacattaaatac 40664333  T
Q  199 ac 200  Q
    ||    
T  40664332 ac 40664331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 13027998 - 13027910
Alignment:
Q  99 aaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaag 188  Q
    |||| ||||||| |||||||||   ||||||||  |||||| || ||||||||| |||||||||||||| ||||||| ||||||||||||    
T  13027998 aaaccaaaaatcgtcaaaaccacg-caattattcattgttgcaactttttgaatatttttacaaatatatcctcatagaaatttgtgaag 13027910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 3711930 - 3711985
Alignment:
Q  240 aaaagtcttttaagcaataaatgatcttaaaagttgtgactttttcttataaatag 295  Q
    ||||||||||||| |||||| |   ||||||||||||||| |||||||||||||||    
T  3711930 aaaagtcttttaaacaataactatccttaaaagttgtgacattttcttataaatag 3711985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 34262804 - 34262721
Alignment:
Q  201 ccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatgatcttaaaagttgtgacttttt 284  Q
    ||||||||||| |||| ||  |||||||  ||||| |||||||||||||||| |||||||||| | | ||| |||| |||||||    
T  34262804 ccactaatattaaaaagacaaacattaattgagggttagaaaagtcttttaaacaataaatgaaccttaaaattgttacttttt 34262721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 284
Target Start/End: Original strand, 2287486 - 2287654
Alignment:
Q  115 aaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaa 214  Q
    ||||||| ||||| |||| | |||| ||  ||||||||||||||| || |||||  ||||  |||||||| || ||||||||| | | ||||||||| ||    
T  2287486 aaaccaagacaataattaatagttgcaacattttgaatgtttttataattatactttcatcgaaatttgtaaaatattaaatata-ctactaatattaaa 2287584  T
Q  215 aatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgacttttt 284  Q
    || |   | ||||||||| || || |||||||||||||  |||||||  || |||||||||||||||||||    
T  2287585 aaaaaaaatattaaacgaaggtta-aaaagtcttttaacaaataaatatattttaaaagttgtgacttttt 2287654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 31365047 - 31365109
Alignment:
Q  154 tttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaa 216  Q
    ||||||||||||||| || ||| ||  ||||||| ||||||||||| ||||||||||| ||||    
T  31365047 tttttacaaatatacacttatagaatgttgtgaaatattaaatacatccactaatattaaaaa 31365109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 9045634 - 9045699
Alignment:
Q  226 taaacgagggctagaaaagtcttttaagcaataaatgatcttaaaagttgtgactttttcttataa 291  Q
    |||| ||||| ||||||| |||||||| |||||| |   ||||||||||||||| |||||||||||    
T  9045634 taaaagagggatagaaaattcttttaaacaataattatacttaaaagttgtgacattttcttataa 9045699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 44173634 - 44173707
Alignment:
Q  143 ttttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaa 216  Q
    |||||| |||||||||| ||||||||||||  |||| ||||| ||||||||| || |  |||||||||| ||||    
T  44173634 ttttttaaatgtttttagaaatataccctcggaaaattttgtaaagtattaactatattcactaatattaaaaa 44173707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 8e-63; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 69 - 287
Target Start/End: Complemental strand, 6658104 - 6657887
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||||||||   ||||| |||||| ||||||||||||| ||||| |||||||||||||    
T  6658104 tactccctccggtcctttttataagaaaagaaaccaaaaatcatcaaaaccttgacaatcattagtggttgtaatttttt-aatgtatttacaaatatac 6658006  T
Q  169 cctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatgatctta 268  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||| ||  |||||||| ||||| |||||||||| ||||| |||||||||  | |     
T  6658005 cctcataaaaatttgtgaagtattaaatatacccactaatattaaaaagacaaacattaaatgagggttagaaaagtcatttaaacaataaatgtacctt 6657906  T
Q  269 aaagttgtgactttttctt 287  Q
    |||||||||||||||||||    
T  6657905 aaagttgtgactttttctt 6657887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 69 - 299
Target Start/End: Complemental strand, 19780458 - 19780227
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    |||||||| ||||||||||||| ||||||||||  | |||||||||||||||| | ||| ||||||| |||||||||||| |||||||||||||||||||    
T  19780458 tactcccttcggtcctttatataagaaaagaaatcataaatcatcaaaaccaagataatcattagttattgtaatttttttaatgtttttacaaatatac 19780359  T
Q  169 cctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatctt 267  Q
    |    || ||||||||||||||||||||| |||||||||| ||||||| |   |||||||| ||||| |||||||||||||||| ||||||||  |||||    
T  19780358 cgcattataaatttgtgaagtattaaatatacccactaattttgaaaagagaaacattaaatgagggttagaaaagtcttttaaacaataaatatatctt 19780259  T
Q  268 aaaagttgtgactttttcttataaataggacc 299  Q
    ||||||||  ||||||||||||| ||||||||    
T  19780258 aaaagttgaaactttttcttatatataggacc 19780227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 69 - 299
Target Start/End: Complemental strand, 180567 - 180336
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    |||| |||||||||||| |||| | || | |||| ||||| |||||||||||||||| | |||| ||  ||||| ||||||||| | |||||||||||||    
T  180567 tactacctccggtccttaatataaaaagaaaaaccaaaaaacatcaaaaccaatacactcattaattagtgtaactttttgaatatgtttacaaatatac 180468  T
Q  169 cctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatctt 267  Q
    ||| ||||||| || |||||  ||||||||| | ||||||||| |||| ||  ||||||||  |||| || |||||||||||||||||||| |  |||||    
T  180467 ccttataaaaaattttgaagcgttaaatacatcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaagcaataactacatctt 180368  T
Q  268 aaaagttgtgactttttcttataaataggacc 299  Q
    |||| ||||||  |||||||||||||||||||    
T  180367 aaaaattgtgatattttcttataaataggacc 180336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 83 - 261
Target Start/End: Complemental strand, 9425706 - 9425527
Alignment:
Q  83 ctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaatttttt-gaatgtttttacaaatataccctcataaaaatt 181  Q
    |||| ||| |||| |||||| |||||||||||||||||| | ||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||| |     
T  9425706 ctttttataagaagagaaaccaaaaatcatcaaaaccaagaaaatcattagttgttgcaatttttttgaatgtttttacaaatatactctcataaaattc 9425607  T
Q  182 tgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat 261  Q
    |||||||||||||||| |  ||||| |||  |||| |   |||||||| ||||  || ||||||||||||| ||||||||    
T  9425606 tgtgaagtattaaatatattcactattatgaaaaagataaacattaaatgaggattaaaaaagtcttttaaacaataaat 9425527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 129 - 299
Target Start/End: Original strand, 606598 - 606769
Alignment:
Q  129 attagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaa 228  Q
    |||| ||||||||| ||||| ||  |||||||||||||||||| ||| ||  |||||||  |||||||||| ||||||||||| |||||||   ||||||    
T  606598 attaattgttgtaactttttaaacatttttacaaatatacccttatagaatgttgtgaaacattaaatacatccactaatattaaaaatacagtcattaa 606697  T
Q  229 acgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaataggacc 299  Q
    |  |||| |  |||||| |||||||| |||| |  | ||||||||||||||| |||||||||||||||||||    
T  606698 ataagggattaaaaagtattttaagctataagtacaccttaaaagttgtgacattttcttataaataggacc 606769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 111 - 258
Target Start/End: Original strand, 34837113 - 34837260
Alignment:
Q  111 atcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatat 210  Q
    ||||||| ||||||| | |||| ||  ||||| ||||||||| |||||||||||||||||||||||||| |||||||| ||| |||||| ||| ||||||    
T  34837113 atcaaaatcaatacactcattaattagtgtaactttttgaatatttttacaaatataccctcataaaaaattgtgaagcattcaatacatccattaatat 34837212  T
Q  211 tgaaaatacctacattaaacgagggctagaaaagtcttttaagcaata 258  Q
    | |||| ||   |||||||  |||| || ||||||||||||| |||||    
T  34837213 taaaaagacaagcattaaataaggggtaaaaaagtcttttaaacaata 34837260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 12143674 - 12143768
Alignment:
Q  102 caaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaata 197  Q
    |||||||| |||||||||||| |||| |||| ||  ||||| ||||||||| |||||||||||| ||||||||||||| |||||||| ||||||||    
T  12143674 caaaaaat-atcaaaaccaatgcaatcattaattaatgtaactttttgaatatttttacaaatacaccctcataaaaaattgtgaagcattaaata 12143768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 68 - 200
Target Start/End: Complemental strand, 7927034 - 7926901
Alignment:
Q  68 ttactccctccggtcctttatatgagaaaagaaa-caaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatat 166  Q
    ||||||||||||||| ||  ||| |||||| ||| ||||||| ||||||||||||||||   |||| ||  | ||| |||||||||    ||||||||||    
T  7927034 ttactccctccggtctttattataagaaaataaaacaaaaaaacatcaaaaccaatacacacattaattagtataactttttgaataagattacaaatat 7926935  T
Q  167 accctcataaaaatttgtgaagtattaaatacac 200  Q
    ||||||||||||| |||||||| |||||||||||    
T  7926934 accctcataaaaaattgtgaagcattaaatacac 7926901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 294
Target Start/End: Complemental strand, 1856908 - 1856752
Alignment:
Q  138 tgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggct 237  Q
    ||||||||||| ||| ||||||||||||||| |||||| ||| | || ||  |||||||||  ||| ||||||| |||| |   | |||||| ||| | |    
T  1856908 tgtaattttttaaatatttttacaaatatactctcatacaaaat-gtaaaacattaaatacttccattaatattaaaaagagaaatattaaatgagagat 1856810  T
Q  238 agaaaagtcttttaagcaataaatgat-cttaaaagttgtgactttttcttataaata 294  Q
    ||||||||||||||| |||||| |||| ||||||||||||||  |||| |||||||||    
T  1856809 agaaaagtcttttaaacaataactgatacttaaaagttgtgatatttttttataaata 1856752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 5428895 - 5428830
Alignment:
Q  102 caaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    |||||||| |||||||||| | |||| |||| ||||||||||||||| ||| |||||||||||||||    
T  5428895 caaaaaat-atcaaaaccattgcaatcattaattgttgtaattttttaaatatttttacaaatatac 5428830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 2950144 - 2950214
Alignment:
Q  138 tgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatat 210  Q
    ||||||||||||||| |||||||||||||| ||| ||||||| |||||||  ||| |||| ||||||||||||    
T  2950144 tgtaattttttgaatatttttacaaatatatcctgataaaaa-ttgtgaaacatt-aatatacccactaatat 2950214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 2443939 - 2443884
Alignment:
Q  144 tttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaataca 199  Q
    ||||||||| | |||| ||||| ||| |||| ||||||||||||||||||||||||    
T  2443939 tttttgaatatctttaaaaataaaccatcattaaaatttgtgaagtattaaataca 2443884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 24789903 - 24789953
Alignment:
Q  117 accaatacaattattagttgttgtaattttttgaatgtttttacaaatata 167  Q
    |||||| |||| |||| ||||||||||||||| ||| ||||||||||||||    
T  24789903 accaatgcaatcattaattgttgtaattttttaaatatttttacaaatata 24789953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 3e-62; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 75 - 299
Target Start/End: Original strand, 38209446 - 38209671
Alignment:
Q  75 ctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcat 174  Q
    |||||||||||||||| |||||| |||  |||||||||||||||||| | ||| |||| |||||| |||||||| ||| |||||| |||||||||||  |    
T  38209446 ctccggtcctttatataagaaaaaaaatcaaaaatcatcaaaaccaagataatcattacttgttgaaattttttaaatatttttataaatataccctttt 38209545  T
Q  175 aaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatg-atcttaaaagt 273  Q
    |||||||||||||||||| |||| |||||||||||||||||| ||| |||||||| ||||| |||| ||||||||||| ||||||||| | |||||||||    
T  38209546 aaaaatttgtgaagtatttaatatacccactaatattgaaaagaccaacattaaatgagggttagagaagtcttttaaacaataaatgtaccttaaaagt 38209645  T
Q  274 tgtgactttttcttataaataggacc 299  Q
    ||||||||||||||||||||| ||||    
T  38209646 tgtgactttttcttataaatatgacc 38209671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 97 - 299
Target Start/End: Original strand, 36408134 - 36408336
Alignment:
Q  97 agaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaat 196  Q
    |||||| ||||||||||||||| || |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  36408134 agaaaccaaaaatcatcaaaactaagacaattattagtagttataattttttgaatgtttttacaaatataccctcataaaaatttgttaagtattaatt 36408233  T
Q  197 acacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatgatcttaaaagttgtgactttttcttataaatagg 296  Q
    | | ||||||||||| |||| ||  |||||||||||||| || |||||| | |||| |||||||||  | | |||||||||||||||||||||| ||| |    
T  36408234 atatccactaatattaaaaagacaaacattaaacgagggttaaaaaagtttgttaaacaataaatgtaccttaaagttgtgactttttcttatatataag 36408333  T
Q  297 acc 299  Q
    |||    
T  36408334 acc 36408336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 69 - 299
Target Start/End: Complemental strand, 8251463 - 8251232
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    |||||||||||||||||  |||||||| | |||| ||||| |||||||||||||||| | |||| ||  |||| |||||||||| |||||||||||||||    
T  8251463 tactccctccggtccttattatgagaagaaaaaccaaaaaacatcaaaaccaatacactcattaattagtgtagttttttgaatatttttacaaatatac 8251364  T
Q  169 cctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatctt 267  Q
    ||||||||||| |||||||| |||||||| || |||||||||| |||| ||   |||||||  | ||  | ||| |||||||||||||||| |  | |||    
T  8251363 cctcataaaaaattgtgaagcattaaataaactcactaatattaaaaagacaaccattaaataatggggaaaaaggtcttttaagcaataattacacctt 8251264  T
Q  268 aaaagttgtgactttttcttataaataggacc 299  Q
    |||||||||||  |||||||||||||||||||    
T  8251263 aaaagttgtgatattttcttataaataggacc 8251232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 99 - 299
Target Start/End: Complemental strand, 2207967 - 2207768
Alignment:
Q  99 aaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatac 198  Q
    |||||||||| ||||||||||| |||| | |||| ||  ||||| ||||||||| |||||||||||||||||||||||||| |||||||| |||||||||    
T  2207967 aaacaaaaaaacatcaaaaccattacactcattatttagtgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaagcattaaatac 2207869  T
Q  199 acccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatg-atcttaaaagttgtgactttttcttataaatagga 297  Q
    ||||| ||||||| |||||||  ||||||||  |||| ||||||| ||||| | ||||||| || ||||||||| ||||||  ||||| |||||||||||    
T  2207868 acccattaatattaaaaatacaaacattaaataaggggtagaaaattctttaacgcaataactgcatcttaaaaattgtgatattttc-tataaatagga 2207770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 99 - 299
Target Start/End: Complemental strand, 1445550 - 1445349
Alignment:
Q  99 aaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatac 198  Q
    ||||||||||||||||||| |||| || | |||  ||  |||||||||||||||  ||||||||||||||| |||| |||| |||||||  |||||||||    
T  1445550 aaacaaaaaatcatcaaaatcaatgcattcattgattaatgtaattttttgaatacttttacaaatataccttcattaaaaattgtgaaacattaaatac 1445451  T
Q  199 acccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat--gatcttaaaagttgtgactttttcttataaatagg 296  Q
    || |||||||||  |||| |   ||||||||  |||| |||||||||| |||||||||||| |   | ||||||||||||||| ||||||||||||||||    
T  1445450 actcactaatatctaaaagagaaacattaaa-tagggatagaaaagtcatttaagcaataacttacaccttaaaagttgtgacattttcttataaatagg 1445352  T
Q  297 acc 299  Q
    |||    
T  1445351 acc 1445349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 5924044 - 5923871
Alignment:
Q  74 cctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatata----cc 169  Q
    ||||||||| ||| ||| |||||| |||  |||||||||||||||||| | ||| |||||| || |||||||||| |||||||||| |||||||    ||    
T  5924044 cctccggtcttttttataagaaaataaatcaaaaatcatcaaaaccaagataatcattagtggtagtaattttttaaatgtttttaaaaatatatatgcc 5923945  T
Q  170 ctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaa 243  Q
    ||||||||||||||| ||||||||| || || |||||||||| |||| ||  |||||||| ||||| |||||||    
T  5923944 ctcataaaaatttgtaaagtattaattatacacactaatattaaaaagacaaacattaaatgagggttagaaaa 5923871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 154 - 299
Target Start/End: Complemental strand, 36054958 - 36054812
Alignment:
Q  154 tttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaag 253  Q
    |||||| ||||||||||| || |||| ||| ||||||||||||||| ||||||||||| |||| ||  |||||||   |||| || |||||||||||||     
T  36054958 tttttataaatatacccttattaaaaattgggaagtattaaatacatccactaatattaaaaagacaaacattaattaaggggtataaaagtcttttaaa 36054859  T
Q  254 caataaat-gatcttaaaagttgtgactttttcttataaataggacc 299  Q
    ||||||||  | ||||||||||||||| |||||||||||||||||||    
T  36054858 caataaatataccttaaaagttgtgacattttcttataaataggacc 36054812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 69 - 295
Target Start/End: Complemental strand, 31659080 - 31658853
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatca-tcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatata 167  Q
    |||||| |||||| ||| |||| |||| | ||||||||||  | |||||| ||||||| | |||| ||  | ||||||||||||| ||||||||||||||    
T  31659080 tactccatccggttcttaatataagaataaaaacaaaaaaaaaatcaaaatcaatacactcattaattagtataattttttgaatatttttacaaatata 31658981  T
Q  168 ccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatct 266  Q
     ||||||||||| || || || |||||||||| |||||| |||| |||| ||  ||||||||  | || || ||||||||||||| |||||| |  ||||    
T  31658980 tcctcataaaaa-ttatgcagcattaaatacatccactagtattaaaaagacaaacattaaataaaggttaaaaaagtcttttaaacaataactacatct 31658882  T
Q  267 taaaagttgtgactttttcttataaatag 295  Q
    ||||||||||||  |||||||||||||||    
T  31658881 taaaagttgtgatattttcttataaatag 31658853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 113 - 293
Target Start/End: Original strand, 2520098 - 2520277
Alignment:
Q  113 caaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattg 212  Q
    ||||||||||||| | |||| ||  ||||| ||||||||| |||||||||||||| ||||||||||| |||||||  ||||||||| | || |||||||     
T  2520098 caaaaccaatacattcattaattaatgtaactttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaatactctcaataatattt 2520197  T
Q  213 aaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaat 293  Q
    |||| |   |||||||| | | | ||| ||||||| ||||||||||| |  ||||||||| ||||||| |||||||||||||    
T  2520198 aaaaaaggaacattaaatg-gaggtag-aaagtctcttaagcaataactacatcttaaaatttgtgacattttcttataaat 2520277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 75 - 211
Target Start/End: Original strand, 16890194 - 16890331
Alignment:
Q  75 ctccggtcctttatatgagaaaaga-aacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctca 173  Q
    |||||||||||  ||| |||||| | || |||||| ||||||||| ||| | |||| || ||  ||||| ||||||||| ||||||||||||||||||||    
T  16890194 ctccggtccttattataagaaaaaataataaaaaaacatcaaaactaatgccattaataattaatgtaactttttgaatatttttacaaatataccctca 16890293  T
Q  174 taaaaatttgtgaagtattaaatacacccactaatatt 211  Q
    |||||| |||||||  |||||||| || ||||||||||    
T  16890294 taaaaaattgtgaaacattaaataaactcactaatatt 16890331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 129 - 288
Target Start/End: Complemental strand, 2152488 - 2152328
Alignment:
Q  129 attagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatatt-gaaaatacctacatta 227  Q
    |||||||  ||||| ||||||||| |||||| ||||||||||| ||||||| |||||||| |||||||| || | ||||||||  |||| |   ||||||    
T  2152488 attagttagtgtaactttttgaatatttttataaatatacccttataaaaaattgtgaagcattaaatagactcgctaatattaaaaaagataaacatta 2152389  T
Q  228 aacgagggctagaaaagtcttttaagcaataaatgatcttaaaagttgtgactttttctta 288  Q
    ||  |||| ||||||||||||||||| |||||   | ||||||| ||||||  ||||||||    
T  2152388 aataaggggtagaaaagtcttttaagtaataacacaccttaaaaattgtgatattttctta 2152328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 30112485 - 30112577
Alignment:
Q  208 tattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaataggacc 299  Q
    |||| |||| || ||||||||||||||| || |||| ||||||||||||||| |  | ||||||| ||||||| |||||||||||||||||||    
T  30112485 tattaaaaagacatacattaaacgagggataaaaaaatcttttaagcaataactacaccttaaaatttgtgacattttcttataaataggacc 30112577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 30653627 - 30653683
Alignment:
Q  144 tttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacac 200  Q
    |||||||||  |||||||||||||||||||||||||||||||||  |||||||||||    
T  30653627 tttttgaataattttacaaatataccctcataaaaatttgtgaaacattaaatacac 30653683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 30870704 - 30870804
Alignment:
Q  111 atcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatat 210  Q
    ||||||| ||||||||| |||| || |||||| | ||| ||| |||| ||||||||||||| ||||||| |||||||  |||||||| | ||||||||||    
T  30870704 atcaaaatcaatacaataattatttcttgtaagtatttaaatattttgacaaatatacccttataaaaaattgtgaaacattaaatatatccactaatat 30870803  T
Q  211 t 211  Q
    |    
T  30870804 t 30870804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 216
Target Start/End: Complemental strand, 27518634 - 27518545
Alignment:
Q  127 ttattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaa 216  Q
    |||||| ||| ||| ||||||| | ||||||   |||||| |||||||||||| ||||||  |||||||| || ||||||||||| ||||    
T  27518634 ttattaattgctgttatttttttattgttttagtaaatatgccctcataaaaagttgtgatatattaaatgcatccactaatattaaaaa 27518545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 30105597 - 30105670
Alignment:
Q  126 attattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaataca 199  Q
    ||||||| ||||||||||||||| ||  |||||||||||||||  | ||| ||  ||||||| |||||||||||    
T  30105597 attattaattgttgtaattttttaaacatttttacaaatatacttttatagaatgttgtgaaatattaaataca 30105670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 266 - 299
Target Start/End: Complemental strand, 35431614 - 35431581
Alignment:
Q  266 ttaaaagttgtgactttttcttataaataggacc 299  Q
    |||||||||||||| |||||||||||||||||||    
T  35431614 ttaaaagttgtgacattttcttataaataggacc 35431581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 69 - 299
Target Start/End: Complemental strand, 14568584 - 14568353
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    |||||||||||||||||||||| ||||||||||  | |||||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||    
T  14568584 tactccctccggtcctttatataagaaaagaaatcataaatcatcaaaaccaagacaatcattagttattgtaatattttgaatgtttttacaaatatac 14568485  T
Q  169 cctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatctt 267  Q
    | |  || |||||| ||||||||| |||| |||||||||| ||||||| |   |||||||| ||||| |||||||||||||||| ||||||||  |||||    
T  14568484 cgtattataaatttttgaagtattcaatatacccactaattttgaaaagagaaacattaaatgagggttagaaaagtcttttaaacaataaatatatctt 14568385  T
Q  268 aaaagttgtgactttttcttataaataggacc 299  Q
    ||||||||  ||||||||||||| ||||||||    
T  14568384 aaaagttgaaactttttcttatatataggacc 14568353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 76 - 298
Target Start/End: Original strand, 10599677 - 10599901
Alignment:
Q  76 tccggtcctttatatgagaaaagaaacaaaa-aatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcat 174  Q
    ||||||||||| ||| |||| | |||||||| ||||||||||||||| ||| | ||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  10599677 tccggtcctttttataagaagaaaaacaaaaaaatcatcaaaaccaagacattgattagttgttgcaatgttttgaatgattttacaaatataccctcat 10599776  T
Q  175 aaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatg-atcttaaaagt 273  Q
    |||| |||||||||||||||||| || ||||| |||| |||| |   |||||||| || || ||||||||| ||| || ||||||||| | || ||||||    
T  10599777 aaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgaaggttagaaaagtttttcaaacaataaatgtacctcaaaagt 10599876  T
Q  274 tgtgactttttcttataaataggac 298  Q
    |||||||||||||||||||||||||    
T  10599877 tgtgactttttcttataaataggac 10599901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 69 - 299
Target Start/End: Complemental strand, 41508327 - 41508096
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    |||||| | ||||||||  ||| |||| | |||| ||||| |||| ||||||||||| |||||| ||  ||||| |||||||||||||||||||||||||    
T  41508327 tactccattcggtccttattataagaagaaaaactaaaaaacatcgaaaccaatacacttattaattagtgtaactttttgaatgtttttacaaatatac 41508228  T
Q  169 cctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatctt 267  Q
    ||||||||||| |||||||| |||||||||||||||||||||| |||| ||  ||||||||  |||| || |||||||||||||||||||| |  | |||    
T  41508227 cctcataaaaaattgtgaagcattaaatacacccactaatattaaaaagacaaacattaaataaggggtaaaaaagtcttttaagcaataactacacctt 41508128  T
Q  268 aaaagttgtgactttttcttataaataggacc 299  Q
    |||| ||||||  ||||||||||  |||||||    
T  41508127 aaaaattgtgatattttcttatatttaggacc 41508096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 92 - 197
Target Start/End: Complemental strand, 10409899 - 10409792
Alignment:
Q  92 agaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaatttttt--gaatgtttttacaaatataccctcataaaaatttgtgaagt 189  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||  ||||||||||| |||||||||||| ||||||||||||||||    
T  10409899 agaaaagaaacaaaaaatcatcaaaaccaaaacaatcattagttgttgcaattttttttgaatgtttttataaatataccctcttaaaaatttgtgaagt 10409800  T
Q  190 attaaata 197  Q
    ||||||||    
T  10409799 attaaata 10409792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 144 - 258
Target Start/End: Original strand, 15033300 - 15033413
Alignment:
Q  144 tttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaa 243  Q
    |||||||||| |||||||||||||| || |||||||||| |||| |||| |||| || ||||||||||||||| ||  | |||||||||| |||| ||||    
T  15033300 tttttgaatgattttacaaatatactctaataaaaatttatgaattattgaatatactcactaatattgaaaagacaaatattaaacgagagcta-aaaa 15033398  T
Q  244 gtcttttaagcaata 258  Q
    ||||||||| |||||    
T  15033399 gtcttttaaacaata 15033413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 138 - 295
Target Start/End: Complemental strand, 20949230 - 20949073
Alignment:
Q  138 tgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggct 237  Q
    ||||| ||||| ||| |||||||||||||||||||||||||| |||||||  |||||||||||  ||||||||| |||| |   ||||||||  |||| |    
T  20949230 tgtaactttttaaatatttttacaaatataccctcataaaaaattgtgaaacattaaatacacatactaatattcaaaagagagacattaaa-tagggat 20949132  T
Q  238 agaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaatag 295  Q
    | |||| || |||||||||||| |  | |||||||||| |||| |||||||||||||||    
T  20949131 aaaaaaatcatttaagcaataactacaccttaaaagttatgacattttcttataaatag 20949073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 145 - 299
Target Start/End: Complemental strand, 7307592 - 7307436
Alignment:
Q  145 ttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacga-gggctagaaaa 243  Q
    ||||| || ||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||| |||| ||  || |||||  | ||||   ||||    
T  7307592 ttttgcatatttttacaaatatactctcataaaaaattgtgaagcattaaatacatccactaatattaaaaaaacaaaccttaaataaggggcataaaaa 7307493  T
Q  244 gtcttttaagcaataaatgatc-ttaaaagttgtgactttttcttataaataggacc 299  Q
     |||||||| |||||| |  || |||||||||||||| |||||||||||||| ||||    
T  7307492 atcttttaaacaataactactctttaaaagttgtgacattttcttataaatatgacc 7307436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 201 - 295
Target Start/End: Complemental strand, 42935549 - 42935454
Alignment:
Q  201 ccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatg-atcttaaaagttgtgactttttcttataaatag 295  Q
    ||||||||| |||||| ||| |||||||| |||   ||||||| |||||||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  42935549 ccactaatactgaaaagaccaacattaaatgagaattagaaaaatcttttaaacaataaatgtatctcaaaagttgtgactttttcttataaatag 42935454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 69 - 190
Target Start/End: Complemental strand, 42935947 - 42935834
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttga-atgtttttacaaatata 167  Q
    |||||||||||||||||||||| ||||||||||| ||||||||         | ||||| ||||||||||| ||||||||   |||||||||||||||||    
T  42935947 tactccctccggtcctttatataagaaaagaaaccaaaaatca---------agacaatcattagttgttgcaattttttttcatgtttttacaaatata 42935857  T
Q  168 ccctcataaaaatttgtgaagta 190  Q
    ||||| |||||| ||||||||||    
T  42935856 ccctcttaaaaacttgtgaagta 42935834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 74 - 211
Target Start/End: Original strand, 17757311 - 17757448
Alignment:
Q  74 cctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctca 173  Q
    |||||||| |||  ||| |||| | |||| ||||||||| |||| ||| ||  | |||| |||| |||| ||||| |||||||||||||||||| | |||    
T  17757311 cctccggttcttattataagaagaaaaaccaaaaatcataaaaatcaagaccgtcattaattgtcgtaacttttttaatgtttttacaaatatatcttca 17757410  T
Q  174 taaaaatttgtgaagtattaaatacacccactaatatt 211  Q
    |||||| ||||||| |||| |||| |||||||||||||    
T  17757411 taaaaaattgtgaattattgaatatacccactaatatt 17757448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 111 - 251
Target Start/End: Original strand, 14658737 - 14658877
Alignment:
Q  111 atcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatat 210  Q
    ||||||||| ||| ||| ||||||| ||  || ||||| ||||||||||||||||||||||||||||||  | ||||||||||||||   |||||| |||    
T  14658737 atcaaaacctataaaatcattagttattacaactttttaaatgtttttacaaatataccctcataaaaacatatgaagtattaaatatttccactagtat 14658836  T
Q  211 tgaaaatacctacattaaacgagggctagaaaagtctttta 251  Q
    | |||| |   |||||||||||||  |  ||||||||||||    
T  14658837 taaaaagataaacattaaacgaggattgaaaaagtctttta 14658877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 45072469 - 45072569
Alignment:
Q  99 aaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatac 198  Q
    ||||||| || |||||||||||||||| | |||| ||  | ||||||||||||| |||||| |||||||| ||||||||||  ||||||| |||||||||    
T  45072469 aaacaaacaaacatcaaaaccaatacactgattaattagtataattttttgaatatttttataaatatactctcataaaaaactgtgaagcattaaatac 45072568  T
Q  199 a 199  Q
    |    
T  45072569 a 45072569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 111 - 259
Target Start/End: Complemental strand, 34470243 - 34470095
Alignment:
Q  111 atcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatat 210  Q
    ||||||| ||||||||| |||| ||  |  || ||||||||| ||||||||||||||  | | || ||| ||||||| |||||||||||| |||||||||    
T  34470243 atcaaaatcaatacaatcattaattaattaaactttttgaatatttttacaaatataaacacttacaaaattgtgaaatattaaatacactcactaatat 34470144  T
Q  211 tgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataa 259  Q
    | |||| |    ||||||||||||| || |||| ||||||||| |||||    
T  34470143 taaaaagagaagcattaaacgagggataaaaaattcttttaagtaataa 34470095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 299
Target Start/End: Complemental strand, 12506905 - 12506704
Alignment:
Q  99 aaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatac 198  Q
    |||| ||||| ||| ||||||||| |||| |||| ||  ||||| |||||| ||  | ||||||||||||||||||||||| |||||||  | |||||||    
T  12506905 aaaccaaaaaacattaaaaccaatgcaatcattaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtgaaacaataaatac 12506806  T
Q  199 acccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaatagga 297  Q
    ||  ||| | ||| |||| |   ||||||||  |||| |||||||||||||| | |||||| |  | |||||||||||| |  ||||||||||  |||||    
T  12506805 acttactgagattaaaaacaaacacattaaataagggatagaaaagtcttttgaacaataactacaccttaaaagttgtaatattttcttatatttagga 12506706  T
Q  298 cc 299  Q
    ||    
T  12506705 cc 12506704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 162 - 290
Target Start/End: Complemental strand, 46341631 - 46341502
Alignment:
Q  162 aatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat 261  Q
    ||||||||||| |||||| |||||||| ||||||||||||||||| |||  |||| |   ||| ||||  || | |||| |||||||||||||||||| |    
T  46341631 aatataccctcgtaaaaagttgtgaagcattaaatacacccactattatcaaaaacaaaaacaataaataagtggtagagaagtcttttaagcaataact 46341532  T
Q  262 -gatcttaaaagttgtgactttttcttata 290  Q
      | ||||||||||||||  ||||||||||    
T  46341531 acaccttaaaagttgtgatattttcttata 46341502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 259
Target Start/End: Complemental strand, 12485473 - 12485313
Alignment:
Q  99 aaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatac 198  Q
    |||| ||||| ||| ||||||||| |||| |||| ||  ||||| |||||| ||  | ||||||||||||||||||||||| |||||||  | |||||||    
T  12485473 aaaccaaaaaacattaaaaccaatgcaatcattaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtgaaacaataaatac 12485374  T
Q  199 acccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataa 259  Q
    ||  ||| | ||| |||| |   ||||||||  |||| |||||||||||||| | ||||||    
T  12485373 acttactgagattaaaaacaaacacattaaataagggatagaaaagtcttttgaacaataa 12485313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 17757486 - 17757558
Alignment:
Q  223 cattaaacgagggctagaaaagtcttttaagcaataaatg-atcttaaaagttgtgactttttcttataaata 294  Q
    |||||||  |||| || ||| ||||||||||||||||||| | ||||||||||||| ||||||||||||||||    
T  17757486 cattaaattagggttaaaaatgtcttttaagcaataaatgtaccttaaaagttgtgtctttttcttataaata 17757558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 13777786 - 13777739
Alignment:
Q  150 aatgtttttacaaatataccctcataaaaatttgtgaagtattaaata 197  Q
    |||||||||| ||||||||  |||||||||||||||||||||||||||    
T  13777786 aatgtttttataaatatacgttcataaaaatttgtgaagtattaaata 13777739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 181 - 299
Target Start/End: Original strand, 46101245 - 46101364
Alignment:
Q  181 ttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatg-atcttaaaagttgtgac 279  Q
    ||||||| |||||| |||| ||||||||||| |||  ||   ||||||| ||||| |||||||||||||| || ||||| |  | |||||||||| ||||    
T  46101245 ttgtgaaatattaagtacatccactaatattaaaatgacaatcattaaatgaggggtagaaaagtcttttgagtaataactacaacttaaaagttatgac 46101344  T
Q  280 tttttcttataaataggacc 299  Q
     |||||||||||||| ||||    
T  46101345 attttcttataaataagacc 46101364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 295
Target Start/End: Original strand, 14650104 - 14650247
Alignment:
Q  150 aatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaa-gtctt 248  Q
    ||||||||||||||||||||||| ||||| ||| ||||||| || ||    |||||| |||| |||  |   ||||| || |||| ||| |||| |||||    
T  14650104 aatgtttttacaaatataccctcgtaaaattttatgaagtaatatat----ccactagtattaaaatgataaacattgaatgaggactaaaaaaagtctt 14650199  T
Q  249 ttaagcaataaatg-atcttaaaagttgtgactttttcttataaatag 295  Q
    ||| |||||||||  ||||||||| ||||||| |||||||||||||||    
T  14650200 ttatgcaataaatacatcttaaaaattgtgacattttcttataaatag 14650247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 29808501 - 29808443
Alignment:
Q  241 aaagtcttttaagcaataaatg-atcttaaaagttgtgactttttcttataaataggac 298  Q
    ||||||||||| |||||||||| | | ||||||||||| ||||||||||||||||||||    
T  29808501 aaagtcttttatgcaataaatgcaccgtaaaagttgtggctttttcttataaataggac 29808443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 46101140 - 46101197
Alignment:
Q  114 aaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccct 171  Q
    ||||| |||||||| |||| |||||||| |||||| ||| ||||||||||||||||||    
T  46101140 aaaactaatacaatcattaattgttgtagttttttaaatatttttacaaatataccct 46101197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 943318 - 943259
Alignment:
Q  111 atcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccct 171  Q
    ||||||||||||||||| |||| |||||||||| |||| ||| |||||||||| |||||||    
T  943318 atcaaaaccaatacaatcattaattgttgtaat-ttttaaatatttttacaaacataccct 943259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 211
Target Start/End: Complemental strand, 18146003 - 18145860
Alignment:
Q  68 ttactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatata 167  Q
    |||||||||||  | |||| ||| |||||| || | |||||  || ||||  ||| ||||||||| ||||| ||| |||||  ||  |||||||||||||    
T  18146003 ttactccctccaatactttttataagaaaaaaagccaaaaaatataaaaattaatgcaattattaattgttataactttttatataattttacaaatata 18145904  T
Q  168 ccctcataaaaatttgtgaagtattaaatacacccactaatatt 211  Q
    |||  ||| ||| |||| || ||||||||||| |||||||||||    
T  18145903 cccgtatagaaagttgtaaaatattaaatacatccactaatatt 18145860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 216
Target Start/End: Complemental strand, 2122547 - 2122429
Alignment:
Q  99 aaacaaaaaatcatcaaaaccaatacaattattagttgttgtaa-ttttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaata 197  Q
    |||| ||||| ||||  |||||||| |||||||| ||  ||||| |||||||||| |||||||||||| | | || |||| |  ||| ||| ||||||||    
T  2122547 aaaccaaaaaacatcttaaccaatataattattaattaatgtaagttttttgaatatttttacaaatacagcatcgtaaacaaatgttaagcattaaata 2122448  T
Q  198 cacccactaatattgaaaa 216  Q
    ||| |||||||||| ||||    
T  2122447 cactcactaatattaaaaa 2122429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 265 - 299
Target Start/End: Complemental strand, 17205159 - 17205125
Alignment:
Q  265 cttaaaagttgtgactttttcttataaataggacc 299  Q
    ||||||||||||||| |||||||||||||||||||    
T  17205159 cttaaaagttgtgacattttcttataaataggacc 17205125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 15968552 - 15968471
Alignment:
Q  98 gaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaa 179  Q
    |||| |||||| ||||||||  || || ||||||| |||||| || ||||||||||||||||||| || ||  |||||||||    
T  15968552 gaaaaaaaaaaacatcaaaattaagacgattattaattgttgcaactttttgaatgtttttacaattacactttcataaaaa 15968471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 3e-53; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 69 - 299
Target Start/End: Original strand, 30041227 - 30041457
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    |||| |||| |||||||| ||| |||||| ||| ||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| ||||||||    
T  30041227 tacttcctcaggtcctttttataagaaaaaaaataaaaaatcatcaaaaccaagacaatcattagtggttgtaattttttgaatgtttttataaatatac 30041326  T
Q  169 cctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatgatctta 268  Q
    ||||||||| ||||||||||||||||||| | ||||||||||| |||| ||  |||||||   |||| |||||||||||||||| ||||||||   | |     
T  30041327 cctcataaagatttgtgaagtattaaatataaccactaatattaaaaagacaaacattaattaagggttagaaaagtcttttaaacaataaatatacctt 30041426  T
Q  269 aaagttgtgactttttcttataaataggacc 299  Q
    |||||||| ||||||||| ||| || |||||    
T  30041427 aaagttgtcactttttctaatatattggacc 30041457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 68 - 237
Target Start/End: Original strand, 43105065 - 43105236
Alignment:
Q  68 ttactccctccggtcctttatatgagaaaagaaa-caaaaaatcatcaaaaccaatacaattattagttgttgtaatttt-ttgaatgtttttacaaata 165  Q
    ||||||||||||||||||||||| |||||| ||| | ||||||||||||||  || ||||| |||| ||||||||||||| |||||||||||||||||||    
T  43105065 ttactccctccggtcctttatataagaaaaaaaaaccaaaaatcatcaaaattaagacaatcattaattgttgtaatttttttgaatgtttttacaaata 43105164  T
Q  166 taccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggct 237  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||| | | |||||||| |||||||    
T  43105165 taccctcataaaaatttgtgaagtatcaaatatacccactaatattgaaaagatcaacattaaatgagggct 43105236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 81 - 250
Target Start/End: Complemental strand, 35104883 - 35104715
Alignment:
Q  81 tcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaat 180  Q
    |||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| |    
T  35104883 tcctttatataagaaaagaaacaaaaaatcatcaaa-ccaagacaattattagttgttgcaattttttgaatgtttgtacaaatataccctcttaaaatt 35104785  T
Q  181 ttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtctttt 250  Q
    || ||| |||||||||| || ||||||||||||||| ||| |||||||| || || ||||||| ||||||    
T  35104784 ttttgaggtattaaatatacacactaatattgaaaagaccaacattaaatgaaggttagaaaaatctttt 35104715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 99 - 262
Target Start/End: Complemental strand, 30577984 - 30577822
Alignment:
Q  99 aaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatac 198  Q
    |||| |||| ||||||||| ||| | ||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||  |||||||||||||||     
T  30577984 aaactaaaattcatcaaaatcaagataat-attagttgttgtaattttttaaatgtttttacaaatataccatcataaaaatgagtgaagtattaaatat 30577886  T
Q  199 acccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatg 262  Q
    | | |||||| ||||||| ||| |||||||| ||||| |||||| |||||||||  ||||||||    
T  30577885 atctactaatgttgaaaagaccaacattaaatgagggatagaaacgtcttttaaataataaatg 30577822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 68 - 299
Target Start/End: Original strand, 46918383 - 46918614
Alignment:
Q  68 ttactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatata 167  Q
    |||||||||||||||||| |||| |||||| |||  ||||| ||||||||||||| | |  |||| ||||||||| ||||| ||  ||||||||||||||    
T  46918383 ttactccctccggtccttaatataagaaaaaaaatcaaaaaacatcaaaaccaatgccaacattaattgttgtaaatttttaaacatttttacaaatata 46918482  T
Q  168 ccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatgatctt 267  Q
    |||| ||| ||  || ||||  ||||||||||  || ||||||| |||| ||  |||||||| || || || |||||||||||||||||||| |   |||    
T  46918483 cccttatagaatattttgaaacattaaatacattcattaatattaaaaagacagacattaaatgaaggataaaaaagtcttttaagcaataactatcctt 46918582  T
Q  268 aaaagttgtgactttttcttataaataggacc 299  Q
    |||| ||||||| |||||||||||||||||||    
T  46918583 aaaaattgtgacattttcttataaataggacc 46918614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 69 - 299
Target Start/End: Complemental strand, 45261588 - 45261360
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    |||||||||||||||||  ||| || ||  |||| ||||| ||||||||||||| || | |||  ||  ||||| ||||||||  |||||||||||||||    
T  45261588 tactccctccggtccttattataagcaacaaaaccaaaaaacatcaaaaccaatgcattcattgattaatgtaactttttgaacatttttacaaatatac 45261489  T
Q  169 cctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatg-atctt 267  Q
    ||||| ||||  |||||||  |||||||||||||||||||||| |||| |   ||||||||  |||| |||||||||| |||||||||||| |  | |||    
T  45261488 cctcaaaaaa--ttgtgaaacattaaatacacccactaatatttaaaagagaaacattaaat-agggatagaaaagtcatttaagcaataactacagctt 45261392  T
Q  268 aaaagttgtgactttttcttataaataggacc 299  Q
    |||||||||||| |||||||||||||||||||    
T  45261391 aaaagttgtgacattttcttataaataggacc 45261360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 69 - 216
Target Start/End: Complemental strand, 49983936 - 49983788
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgttttt---acaaata 165  Q
    |||||||| |||| |||| ||| ||||||||||  ||||||||| |||||||| ||||| ||||||  ||||||||||| ||||||||||   |||||||    
T  49983936 tactccctacggtgcttt-tataagaaaagaaatcaaaaatcattaaaaccaagacaatcattagtgattgtaattttt-gaatgttttttttacaaata 49983839  T
Q  166 taccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaa 216  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  49983838 taccctcataaaaatttgtgaagtattaaatatacccactaatattaaaaa 49983788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 68 - 297
Target Start/End: Original strand, 40344854 - 40345080
Alignment:
Q  68 ttactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatata 167  Q
    ||||||||||||||||||  ||| ||||||  || |||||  ||||||||||||| || | |||  || ||| || ||||||||| ||||||||||||||    
T  40344854 ttactccctccggtccttattataagaaaaataaaaaaaa--catcaaaaccaatgcagtcattgattattgcaactttttgaatatttttacaaatata 40344951  T
Q  168 ccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatct 266  Q
    |||| ||||||| |||||||  |||||||  || |||||||||| |||| ||  | |||||| ||||| || |||||||| ||||||||| | |  | ||    
T  40344952 cccttataaaaaattgtgaaccattaaat--actcactaatattaaaaagacaaatattaaatgaggggtataaaagtctcttaagcaatgactacacct 40345049  T
Q  267 taaaagttgtgactttttcttataaatagga 297  Q
    ||||||||||||| |||||||||| ||||||    
T  40345050 taaaagttgtgacattttcttatagatagga 40345080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 138 - 299
Target Start/End: Original strand, 17003567 - 17003728
Alignment:
Q  138 tgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggct 237  Q
    ||||| ||||||||| |||||||||||||||||||||||||| |||||||  |||||| ||||||||||||||| |||| |   ||||||||  |||| |    
T  17003567 tgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaaacattaaa-tagggat 17003664  T
Q  238 agaaaagtcttttaagcaataaat-gatcttaaaagttgtgac-tttttcttataaataggacc 299  Q
    | ||||||| |||||||||||| |  | ||||||||||||||| ||||| ||||||||||||||    
T  17003665 aaaaaagtcatttaagcaataactacaccttaaaagttgtgacattttttttataaataggacc 17003728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 69 - 299
Target Start/End: Complemental strand, 35455531 - 35455304
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    ||||| |||||||||||  ||| || ||  |||| ||||| ||||||||||||| || |||||  ||   |||| ||||||||| ||| |||||||||||    
T  35455531 tactcactccggtccttattataagcaacaaaactaaaaaacatcaaaaccaatgcatttattgattaaagtaactttttgaatatttctacaaatatac 35455432  T
Q  169 cctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatctt 267  Q
      ||||||||| |||||||  ||||||||||| ||||||||||  |||||   ||||||||  |||| |||||||||| |||||||||||| |  | |||    
T  35455431 --tcataaaaaattgtgaaacattaaatacactcactaatatt-taaatataaacattaaa-tagggatagaaaagtcatttaagcaataattacacctt 35455336  T
Q  268 aaaagttgtgactttttcttataaataggacc 299  Q
    |||||||||||| |||||||||||||| ||||    
T  35455335 aaaagttgtgacattttcttataaataagacc 35455304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 99 - 294
Target Start/End: Complemental strand, 22923828 - 22923629
Alignment:
Q  99 aaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatac 198  Q
    |||| |||||||||||||| ||| | | | |||| ||||||||| |||||  || |||||||||||||||| |||||||||||||||| ||||||||||     
T  22923828 aaactaaaaatcatcaaaatcaagatagtcattaattgttgtaactttttatatatttttacaaatataccttcataaaaatttgtgatgtattaaatat 22923729  T
Q  199 acccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat----gatcttaaaagttgtgactttttcttataaata 294  Q
    ||| ||||||||| |||| | |   ||||||  | |  |||||| ||| ||||| ||||||||     |||||| ||||||| |||||||||||||||||    
T  22923728 acctactaatattaaaaagatcacaattaaattatgattagaaatgtcctttaaccaataaatatagtatcttacaagttgtaactttttcttataaata 22923629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 144 - 299
Target Start/End: Original strand, 8825355 - 8825509
Alignment:
Q  144 tttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaa 243  Q
    ||||| ||| |||||| ||||||||||| ||||||| ||||| || ||||||||||| || ||||||| ||||||    ||||||| || || |||||||    
T  8825355 tttttaaatatttttataaatatacccttataaaaaattgtgtagcattaaatacactcattaatatt-aaaataaagtcattaaatgaaggatagaaaa 8825453  T
Q  244 gtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaataggacc 299  Q
    |||||||||||||||| |  | ||||||| ||||||| |||||||||||||||||||    
T  8825454 gtcttttaagcaataactacaccttaaaa-ttgtgacattttcttataaataggacc 8825509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 43105935 - 43106004
Alignment:
Q  225 ttaaacgagggctagaaaagtcttttaagcaataaatgatcttaaaagttgtgactttttcttataaata 294  Q
    ||||| ||||| |||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||    
T  43105935 ttaaatgagggttagaaaagtcttttaaacaataaataaccttaaaagttgtgactttttcttataaata 43106004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 49983630 - 49983561
Alignment:
Q  222 acattaaacgagggctagaaaagtcttttaagcaataaatg-atcttaaaagttgtgactttttcttata 290  Q
    |||||||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  49983630 acattaaatgagggttagaaaagtcttttaaacaataaatgtatcttaaaagttgtgactttttcttata 49983561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 97 - 298
Target Start/End: Complemental strand, 24650323 - 24650120
Alignment:
Q  97 agaaacaaaaaatcatcaaaaccaatacaatt---attagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtatta 193  Q
    ||||||||||||| ||||||||||| |||||    ||||||||||| ||||||||  ||  ||||||||||||||  | ||||||| ||||||| |||||    
T  24650323 agaaacaaaaaattatcaaaaccaagacaatattcattagttgttgcaattttttttatacttttacaaatatacttttataaaaaattgtgaaatatta 24650224  T
Q  194 aatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaa 292  Q
    ||||  | |||||||||| |||| ||  | |||||| || || || |||||| |||| | ||||||||  | |||||||||||| |  |||| |||||||    
T  24650223 aatatgctcactaatattaaaaagacaaaaattaaaagaaggttaaaaaagtttttttaacaataaatataccttaaaagttgtaa--tttttttataaa 24650126  T
Q  293 taggac 298  Q
    ||||||    
T  24650125 taggac 24650120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 114 - 299
Target Start/End: Complemental strand, 55452612 - 55452425
Alignment:
Q  114 aaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaata-ttg 212  Q
    |||| |||||||||||||| || |||||| ||||| |||  |||| ||||||||  |||||||||| ||||||   |||||||||||| ||||||| ||     
T  55452612 aaaatcaatacaattattaattattgtaacttttttaattcttttgcaaatata--ctcataaaaa-ttgtgagtcattaaatacacctactaatactta 55452516  T
Q  213 aaaatacctacattaaacgagggctagaaaagtcttttaagcaataaa----tgatcttaaaagttgtgactttttcttataaataggacc 299  Q
    |||| ||  | |||||  ||||| ||||||| ||||||||||||||||      || |||||||||||||| |||||||||||||| ||||    
T  55452515 aaaagacagatattaattgagggatagaaaaatcttttaagcaataaaaactacattttaaaagttgtgacattttcttataaataagacc 55452425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 299
Target Start/End: Complemental strand, 41560133 - 41559983
Alignment:
Q  144 tttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaa 243  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||       || ||||||||||  ||| ||  |||||||| ||| | || ||||    
T  41560133 tttttgaatgtttttataaatataccttcataaaaatttgtgaagtat------aactcactaatattagaaagacaaacattaaatgagagttaaaaaa 41560040  T
Q  244 gtcttttaagcaataaatg-atcttaaaagttgtgactttttcttataaataggacc 299  Q
    |||||||||   ||||||| ||||||||| || ||| ||||||||||| || |||||    
T  41560039 gtcttttaaatcataaatgtatcttaaaaattatgattttttcttatatattggacc 41559983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 42279192 - 42279285
Alignment:
Q  104 aaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaata 197  Q
    |||||||||||||| ||| |   | |||| |||| |||| ||||| ||| ||||||||||||||||||||||||||||| |||| |||||||||    
T  42279192 aaaaatcatcaaaatcaagatcgtcattaattgtggtaacttttttaatatttttacaaatataccctcataaaaatttatgaaatattaaata 42279285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 193 - 299
Target Start/End: Original strand, 32211834 - 32211941
Alignment:
Q  193 aaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataa 291  Q
    ||||||||||||||||||| |||| ||  ||||||||  | || |||||||||||||||| |||||| |  | ||||||||||||||  |||||||||||    
T  32211834 aaatacacccactaatattaaaaagacaaacattaaataacgggtagaaaagtcttttaaacaataactacaccttaaaagttgtgaaattttcttataa 32211933  T
Q  292 ataggacc 299  Q
    ||| ||||    
T  32211934 ataagacc 32211941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 36659407 - 36659280
Alignment:
Q  73 ccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctc 172  Q
    |||||||||||||  ||| |||||  ||||  |||| |||||||| |||||||||  ||| ||  ||||| ||||||||| ||||||||| ||||||||     
T  36659407 ccctccggtccttattataagaaacaaaacttaaaaacatcaaaatcaatacaatcgttaattaatgtaactttttgaatatttttacaagtatacccta 36659308  T
Q  173 ataaaaatttgtgaagtattaaatacac 200  Q
    ||||||| || ||||  |||||||||||    
T  36659307 ataaaaaattatgaaacattaaatacac 36659280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 27828599 - 27828545
Alignment:
Q  143 ttttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaata 197  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| || ||||||    
T  27828599 ttttttgaatatttttacaaatataccttcataaaaatttgtgaaatactaaata 27828545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 69 - 296
Target Start/End: Original strand, 43320058 - 43320280
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    |||||| ||||||||||  ||| |||| | |||| ||||| ||||||||| |||  ||| |||| |   | ||| ||||||||| |||||||||||| ||    
T  43320058 tactccttccggtccttattataagaagaaaaaccaaaaaacatcaaaactaatgtaataattaatatgtctaactttttgaatatttttacaaatacac 43320157  T
Q  169 cctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataa-atgatctt 267  Q
    ||| ||||||| | | |||| ||||||||||  |||||      |||| ||  ||||| ||   |||||||||||||||||||| ||||||    | |||    
T  43320158 ccttataaaaaatcgcgaagcattaaatacattcacta------aaaagacaaacattgaataggggctagaaaagtcttttaaacaataaccacacctt 43320251  T
Q  268 aaaagttgtgactttttcttataaatagg 296  Q
    |||||||||||| ||||||||||||||||    
T  43320252 aaaagttgtgacattttcttataaatagg 43320280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 299
Target Start/End: Original strand, 48271700 - 48271899
Alignment:
Q  99 aaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatac 198  Q
    |||| ||||| |||||||| |||| || |||| | ||||||||  |||| |||| ||| |||||||||||||||||  ||| || ||||| ||||||| |    
T  48271700 aaaccaaaaaacatcaaaatcaatgcagttataaattgttgtagctttt-gaatatttatacaaatataccctcatggaaagttttgaagcattaaatgc 48271798  T
Q  199 acccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataa-atgatcttaaaagttgtgactttttcttataaatagga 297  Q
    ||  ||||||||| ||||   | |  ||||| ||||| ||| || ||||||||||||||||  | || ||| |||||||||| |||||||||||||| ||    
T  48271799 acatactaatattaaaaaggac-atgttaaaggagggataggaaggtcttttaagcaataatttcattttagaagttgtgacattttcttataaatatga 48271897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 28695770 - 28695674
Alignment:
Q  72 tccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    |||||| ||||||| |||| |||| | |||  |||||||||| ||||||||| ||| |||| ||  ||||| ||||||||| |||||||||||||||    
T  28695770 tccctctggtccttaatataagaagaaaaattaaaaatcatctaaaccaatataatcattaattagtgtaactttttgaatatttttacaaatatac 28695674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 38363576 - 38363520
Alignment:
Q  240 aaaagtcttttaagcaataaatgatc-ttaaaagttgtgactttttcttataaatag 295  Q
    |||||||||||||||||||||||| | ||||||||||  ||||||||||||||||||    
T  38363576 aaaagtcttttaagcaataaatgaactttaaaagttgcaactttttcttataaatag 38363520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 261
Target Start/End: Complemental strand, 49787919 - 49787779
Alignment:
Q  123 acaattattagttgttgtaattttttgaatgttttt--acaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacc 220  Q
    ||||| ||||||  |||||||||| ||||| | |||  ||||||| ||||||||  |||||||| || ||||||||| || || |||| || |||  ||     
T  49787919 acaatgattagtcattgtaattttatgaatatcttttgacaaatacaccctcattgaaatttgtaaaatattaaatatactcattaattttaaaaggaca 49787820  T
Q  221 tacattaaacgagggctagaaaagtcttttaagcaataaat 261  Q
     |||||||||||||| || |||||| |||||| ||||||||    
T  49787819 aacattaaacgagggttataaaagtattttaaacaataaat 49787779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 25294782 - 25294897
Alignment:
Q  72 tccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccct 171  Q
    ||||||||||||||  ||| |||||  |||| ||||| |||||| ||||||||||| |||| ||  || || | ||| ||| |||||| ||| |||| ||    
T  25294782 tccctccggtccttattataagaaacaaaaccaaaaaacatcaataccaatacaatcattaattaatgaaactatttaaatatttttataaacatactct 25294881  T
Q  172 cataaaaatttgtgaa 187  Q
    |||||||| |||||||    
T  25294882 cataaaaaattgtgaa 25294897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 32211740 - 32211843
Alignment:
Q  69 tactccctccggtcctt-ta-tatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatat 166  Q
    ||||||||||||||||| || ||| |||| | |||||||||| ||||||||||||| || | |||| ||  |||||||||||  || ||||||||||||     
T  32211740 tactccctccggtccttatagtataagaagaaaaacaaaaaaacatcaaaaccaatgcactcattaattagtgtaattttttttatatttttacaaatac 32211839  T
Q  167 accc 170  Q
    ||||    
T  32211840 accc 32211843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 293
Target Start/End: Original strand, 25295085 - 25295198
Alignment:
Q  181 ttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgac 279  Q
    |||||||  ||| |||| ||||||||||||| |||| |    ||||||| ||||| || ||||||||||||| |||||| |  | |||||||||||| ||    
T  25295085 ttgtgaaacatttaataaacccactaatattaaaaagagaagcattaaatgagggataaaaaagtcttttaaacaataattacaccttaaaagttgtaac 25295184  T
Q  280 tttttcttataaat 293  Q
     |||||||||||||    
T  25295185 attttcttataaat 25295198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 78 - 299
Target Start/End: Original strand, 38763 - 38984
Alignment:
Q  78 cggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaa 177  Q
    ||||||||| ||| | ||||||||| |||||| ||||  ||||| ||||| ||||||| ||| |||||||||||||||||||||||||||| ||||||||    
T  38763 cggtcctttttataaaaaaagaaaccaaaaattatcacgaccaaaacaatcattagttcttgcaattttttgaatgtttttacaaatatactctcataaa 38862  T
Q  178 aatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgt 276  Q
    |||||| ||| ||||||| | | ||||||||||||| || | | ||||| ||  |||||||||||| | |||||| ||||||||  ||||||||| ||||    
T  38863 aatttgggaactattaaacatatccactaatattgataa-aacgacattcaataagggctagaaaaatattttaaacaataaatatatcttaaaaattgt 38961  T
Q  277 gactttttcttataaataggacc 299  Q
    |||||||||||||||||| ||||    
T  38962 gactttttcttataaataagacc 38984  T

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Target: scaffold0006 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 104 - 287
Target Start/End: Complemental strand, 131921 - 131735
Alignment:
Q  104 aaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgttttt-acaaatataccctcataaaaatttgtgaagt---attaaataca 199  Q
    ||||||||||||||| || ||||| ||||||  ||||||||||| |||||||||| |||||||||||||||||||||||||||||||   |||||||| |    
T  131921 aaaaatcatcaaaacgaagacaatcattagtaattgtaattttt-gaatgttttttacaaatataccctcataaaaatttgtgaagtattattaaatata 131823  T
Q  200 cccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatgatcttaaaagttgtgactttttctt 287  Q
     ||||||||||| |||| ||  || || |  || || |||||||||||||| | |||||||||  | | |||||||||||||||||||    
T  131822 accactaatattaaaaagacaaacttttattgaaggttagaaaagtcttttgaacaataaatgcaccttaaagttgtgactttttctt 131735  T

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Target: scaffold0088 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 116 - 295
Target Start/End: Complemental strand, 51453 - 51273
Alignment:
Q  116 aaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacacccactaatattgaaa 215  Q
    |||||||||||| |||| ||  |||||  |||||||| ||||||||| |||||||||||||||| |||||||  |||||||||||| ||||| ||| |||    
T  51453 aaccaatacaatcattaattaatgtaacattttgaatatttttacaattataccctcataaaaagttgtgaaacattaaatacaccaactaaaattaaaa 51354  T
Q  216 atacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaatag 295  Q
    | |     |||||| ||||| || |||| |||||||||||||||||  | ||||||||||||||| ||| |||||||||||    
T  51353 agagaattattaaatgagggataaaaaaatcttttaagcaataaatacaccttaaaagttgtgacatttacttataaatag 51273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 69 - 295
Target Start/End: Complemental strand, 154567 - 154340
Alignment:
Q  69 tactccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatatac 168  Q
    |||||| ||||||||||  ||| | || | |||||||||| |||||||||||||||| | |||| ||  ||||| || |||||| |||||||||| || |    
T  154567 tactccttccggtccttattataaaaagaaaaacaaaaaaacatcaaaaccaatacactcattaattagtgtaacttgttgaatatttttacaaacatgc 154468  T
Q  169 cctcataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatctt 267  Q
    |||||||||||  ||||||| ||||||||||||||| |||||| |||| ||  ||||||||  |  | || ||| ||||||||| |||||| |  | |||    
T  154467 cctcataaaaaactgtgaagcattaaatacacccaccaatattaaaaagacaaacattaaataaaaggtaaaaaggtcttttaaacaataactacacctt 154368  T
Q  268 aaaagttgtgactttttcttataaatag 295  Q
    ||||||||| |  |||||||||||||||    
T  154367 aaaagttgtaatattttcttataaatag 154340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 104 - 299
Target Start/End: Original strand, 453 - 649
Alignment:
Q  104 aaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatacaccca 203  Q
    ||||| |||||| |||||||| || |||| ||||||||| ||||| ||  |||||||||||||||||| ||| ||  |||||||  |||||||  | |||    
T  453 aaaaaacatcaataccaataccatcattaattgttgtaactttttaaagatttttacaaatatacccttatagaatgttgtgaaacattaaatggatcca 552  T
Q  204 ctaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaat-gatcttaaaagttgtgactttttcttataaataggacc 299  Q
    |||||||| |||  ||   ||||||| ||||| || ||||||||||||| |||||| |  | |||||| |||||||||||||||||||| |||||||    
T  553 ctaatattaaaacgacaatcattaaatgagggataaaaaagtcttttaaacaataactacaccttaaatgttgtgactttttcttataattaggacc 649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 73 - 299
Target Start/End: Complemental strand, 3245 - 3018
Alignment:
Q  73 ccctccggtcctttatatgagaaaagaaacaaaaaatcatcaaaaccaatacaattattagttgttgtaattttttgaatgtttttacaaatataccctc 172  Q
    |||||||||||||  ||| |||| | |||| ||||| |||||||||||||||  | |||| || |||||  ||||| ||  |||||||||| || ||||     
T  3245 ccctccggtccttattataagaagaaaaaccaaaaaacatcaaaaccaatactgtcattaattcttgtacctttttaaacatttttacaaacatgccctt 3146  T
Q  173 ataaaaatttgtgaagtattaaatacacccactaatattgaaaatacctacattaaacgagggctagaaaagtcttttaagcaataaatg-atcttaaaa 271  Q
    ||| ||  |||||||  |||||||||| ||||||||||| |||| |     ||| || ||||| |||||||||||||||| |||||| |  | |||||||    
T  3145 atagaatgttgtgaaacattaaatacatccactaatattaaaaagagaattattgaatgagggatagaaaagtcttttaaacaataactacaccttaaaa 3046  T
Q  272 gttgtgactttttcttataaataggacc 299  Q
    |||||||| |||||||||||||||||||    
T  3045 gttgtgacattttcttataaataggacc 3018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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