View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14605_low_23 (Length: 243)
Name: NF14605_low_23
Description: NF14605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14605_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 49921428 - 49921650
Alignment:
| Q |
3 |
cagaagaaaaaacagctacagggtagctaaacagcatctattgtcgaacgaactgaactcgaagtgcatcatcatgcagaagaggcaagataccatcagg |
102 |
Q |
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| T |
49921428 |
cagaagaaaaaacagctacagggtagctaaacagcttctattgccgagcgaactgaactcgaagtgcatcatcctgcagcagaggcaagataccatcagg |
49921527 |
T |
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| Q |
103 |
tggttctacaaactcctgccaagcttcgttatagttcgcgcccatcttcgccatgaaatcagtcgtggcattcgcctcccgccacgtatgactcagttgt |
202 |
Q |
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| T |
49921528 |
tggttctacaaactcctgccaagcttcgttacagttcgcgcccatcttcgccatgaaatcagctgtggcattcgcctcccgccacgtatgactcagttgt |
49921627 |
T |
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| Q |
203 |
aaatgccaatcgtgagtcatcag |
225 |
Q |
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|||||||||||| ||| |||||| |
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| T |
49921628 |
aaatgccaatcgcgagccatcag |
49921650 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 13799889 - 13799826
Alignment:
| Q |
143 |
cccatcttcgccatgaaatcagtcgtggcattcgcctcccgccacgtatgactcagttgtaaat |
206 |
Q |
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| T |
13799889 |
cccatcttcaccatgaaatcagctgtagcatttgcctcccaccacgtatgactcagttggaaat |
13799826 |
T |
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