View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14605_low_24 (Length: 242)
Name: NF14605_low_24
Description: NF14605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14605_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 54917874 - 54918037
Alignment:
| Q |
20 |
aatgggagttgggctatgactcatatagctagcaacattcctcgttattgccactcctaaagcaaaatctaatagaggaaccgatagatacaaggaacgc |
119 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||| ||||| | |
|
|
| T |
54917874 |
aatgggagtttggctatgactcatatagctagcaacattcctcattgttgccactcctaaagcaaaatctaatacaggaaccgatagatac-gggaacac |
54917972 |
T |
|
| Q |
120 |
acttattagcatgcatcagagacagatcaccccattgttcatcccatctagtattcaaaaatcgt |
184 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
54917973 |
acttattagcatgtatcagagacaaatcaccccattgttcatcccacctagtattcaaaaatcgt |
54918037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 54918074 - 54918121
Alignment:
| Q |
183 |
gtggaagtttgtgcttgctacctagtcaaaacaaccctagtataatct |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54918074 |
gtggaagtttgtgcttgctacctagtcaaaacaaccctagtataatct |
54918121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 15167447 - 15167485
Alignment:
| Q |
24 |
ggagttgggctatgactcatatagctagcaacattcctc |
62 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
15167447 |
ggagttgggctatgactaatatagctggcaacattcctc |
15167485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 15181530 - 15181568
Alignment:
| Q |
24 |
ggagttgggctatgactcatatagctagcaacattcctc |
62 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
15181530 |
ggagttgggctatgactaatatagctggcaacattcctc |
15181568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 15476306 - 15476268
Alignment:
| Q |
24 |
ggagttgggctatgactcatatagctagcaacattcctc |
62 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
15476306 |
ggagttgggctatgactaatatagctggcaacattcctc |
15476268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 23254020 - 23253982
Alignment:
| Q |
24 |
ggagttgggctatgactcatatagctagcaacattcctc |
62 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
23254020 |
ggagttgggctatgactaatatagctggcaacattcctc |
23253982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University