View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14605_low_7 (Length: 425)

Name: NF14605_low_7
Description: NF14605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14605_low_7
NF14605_low_7
[»] chr3 (3 HSPs)
chr3 (7-411)||(39939092-39939493)
chr3 (7-67)||(39938996-39939056)
chr3 (31-89)||(39938922-39938981)
[»] chr7 (2 HSPs)
chr7 (327-398)||(30973612-30973683)
chr7 (328-398)||(25296815-25296885)
[»] chr4 (1 HSPs)
chr4 (328-383)||(21236383-21236438)
[»] chr2 (2 HSPs)
chr2 (328-370)||(10765110-10765152)
chr2 (336-407)||(25517013-25517085)
[»] chr8 (1 HSPs)
chr8 (23-68)||(25799140-25799185)
[»] chr1 (1 HSPs)
chr1 (328-397)||(38585634-38585703)


Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 7 - 411
Target Start/End: Original strand, 39939092 - 39939493
Alignment:
Q  7 caaagggtatgaaacatacatgttgacattgacaattatttaagaaaatgaattaattgaatttaacatatgtgttagtgttgaacatgacttcaataag 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  39939092 caaagagtatgaaacatacatgttgacattgacaattatttaagaaaatgaattaattgaatttaacatatgtgttattgttgaacctgacttcaataag 39939191  T
Q  107 aagtattggtgctattgaggttttatgtgcagtgttttagagggtacgtcttcactttttctgaaatggatttggtgtagtgattgtattgcaaagttta 206  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||    
T  39939192 aagtattggtgctattgaggttttgtgtgcagtgttttagagggtacgtcttcac-ttttctgaaatggatttggtgaagtgattgtattgcaaagatta 39939290  T
Q  207 taatttcgaccacctgatctagattaccgcccaaaatcgttataaatgatttatttttaatttttgtgttaaaccttcggttcccagcacaaggggctct 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||| |||    
T  39939291 taatttcgaccacctgatctagattaccgcccaaaatcgttataaatgaattatttttaa--tttgtgttaaaccttcggttcccagcacaaggggatct 39939388  T
Q  307 aataatccggagctcgtgcgataagtatagtctgaccaaaaattgtttcatccagaaatcgaaccccagttctcctgaacaattcgtccttttatggaac 406  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  39939389 aataatccggagctcgtgtgataagtataatctgaccaaaaattgtttcatccagaaatcgaaccccagttctcccgaacaattcgtcctcttatggaac 39939488  T
Q  407 ttatt 411  Q
    |||||    
T  39939489 ttatt 39939493  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 39938996 - 39939056
Alignment:
Q  7 caaagggtatgaaacatacatgttgacattgacaattatttaagaaaatgaattaattgaa 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39938996 caaagggtatgaaacatacatgttgacattgacaattatttaagaaaatgaattaattgaa 39939056  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 39938922 - 39938981
Alignment:
Q  31 gacattgacaattatttaagaaaatgaattaattg-aatttaacatatgtgttagtgttg 89  Q
    |||||||  |||||||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  39938922 gacattggtaattatttaagaaaataaattaattgaaatgtaacatatgtgttagtgttg 39938981  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 398
Target Start/End: Original strand, 30973612 - 30973683
Alignment:
Q  327 ataagtatagtctgaccaaaaattgtttcatccagaaatcgaaccccagttctcctgaacaattcgtccttt 398  Q
    |||||||||||||||| || |||||||| || || |||| |||| | |||||||||||||||||||||||||    
T  30973612 ataagtatagtctgacaaagaattgttttattcaaaaattgaactcaagttctcctgaacaattcgtccttt 30973683  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 398
Target Start/End: Original strand, 25296815 - 25296885
Alignment:
Q  328 taagtatagtctgaccaaaaattgtttcatccagaaatcgaaccccagttctcctgaacaattcgtccttt 398  Q
    ||||||||||||| |||| ||||||| || | || |||| ||| | ||||||||||||| |||||||||||    
T  25296815 taagtatagtctggccaagaattgttccaccgaggaatcaaactcaagttctcctgaacgattcgtccttt 25296885  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 21236383 - 21236438
Alignment:
Q  328 taagtatagtctgaccaaaaattgtttcatccagaaatcgaaccccagttctcctg 383  Q
    |||||||||||||||||| |||| || |||||||||||||||| |  |||||||||    
T  21236383 taagtatagtctgaccaagaattattccatccagaaatcgaactcgggttctcctg 21236438  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 370
Target Start/End: Complemental strand, 10765152 - 10765110
Alignment:
Q  328 taagtatagtctgaccaaaaattgtttcatccagaaatcgaac 370  Q
    |||||||||||||||||| | |||||||||||| |||||||||    
T  10765152 taagtatagtctgaccaagatttgtttcatccaaaaatcgaac 10765110  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 407
Target Start/End: Complemental strand, 25517085 - 25517013
Alignment:
Q  336 gtctgaccaaaaattgtttca-tccagaaatcgaaccccagttctcctgaacaattcgtccttttatggaact 407  Q
    |||||| ||| |||||||||| ||||| |||| ||| | |||||||||||| |||||||| ||| ||||||||    
T  25517085 gtctgatcaagaattgtttcaatccaggaatcaaactcaagttctcctgaataattcgtcatttaatggaact 25517013  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 25799140 - 25799185
Alignment:
Q  23 tacatgttgacattgacaattatttaagaaaatgaattaattgaat 68  Q
    |||||||||||||||  ||| |||| ||||||||||||||||||||    
T  25799140 tacatgttgacattggtaataatttgagaaaatgaattaattgaat 25799185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 397
Target Start/End: Complemental strand, 38585703 - 38585634
Alignment:
Q  328 taagtatagtctgaccaaaaattgtttcatccagaaatcgaaccccagttctcctgaacaattcgtcctt 397  Q
    |||||| ||||| || |||||||||||||| || ||||| ||| |  ||||| |||||||||||||||||    
T  38585703 taagtaaagtctaacaaaaaattgtttcattcataaatcaaactcgtgttcttctgaacaattcgtcctt 38585634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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