View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14605_low_9 (Length: 397)
Name: NF14605_low_9
Description: NF14605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14605_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 41534536 - 41534281
Alignment:
| Q |
1 |
tctcatggctccaatattcttggaaaaaatttcatcaccgaaattcaaaaacccattgcttccatgcttacaactttaacacaacacaagcatgtcacaa |
100 |
Q |
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| T |
41534536 |
tctcatggctccaatattcttggaaaaaatttcatcaccgaaattcaaaaacccattgcttccatgcttgcaactttaacacaacacaagcatgtcacaa |
41534437 |
T |
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| Q |
101 |
ccattgaagcttagaacaaaaaatataaaat----aaatgtgacacatgaaatgaaatcaactccacgttgtcaaaccagaataccatcatcaccaacta |
196 |
Q |
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| T |
41534436 |
ccattgaagcttagaacaaaaaatataaaataaataaatgtgacacatgaaatgaaatcaactccacgttgtcaaaccagaataccatcatcaccaacga |
41534337 |
T |
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| Q |
197 |
agca-----acctcacctcacgactttgattgaaagaaagaagaatttgcattacc |
247 |
Q |
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| T |
41534336 |
agcaacctcacctcacctcacgactttgattgaaagaaagaagaatttgcattacc |
41534281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 272 - 393
Target Start/End: Complemental strand, 41534266 - 41534135
Alignment:
| Q |
272 |
tgatgcgcaaattagcatcatcacacacaaacaggtaatactacgcaccacactcaagataacgctaataccttctct----------ctctagtctagt |
361 |
Q |
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| T |
41534266 |
tgatgcgcaaattagcatcatcacacacaaacaggtaatactacgcaccacactcaagataacgctaataccttctctctctttctctctctagtctagt |
41534167 |
T |
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| Q |
362 |
ctagtcttactctgtctccacctgcctgcttc |
393 |
Q |
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| T |
41534166 |
ctagtcttactctgtcaccaccttccttcttc |
41534135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 41538330 - 41538282
Alignment:
| Q |
97 |
acaaccattgaagcttagaacaaaaaatataaaataaatgtgacacatg |
145 |
Q |
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| T |
41538330 |
acaaccactgaagcttaaaacaaaaaatataaaataaatgtgacccatg |
41538282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 41542661 - 41542597
Alignment:
| Q |
30 |
tttcatcaccgaaattcaaaaacccattgcttccatgcttacaactttaacacaacacaagcatg |
94 |
Q |
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| T |
41542661 |
tttcataacccaaattcaaaaacccaatgcttccatgtttgcaactttaacataacacatgcatg |
41542597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 41542553 - 41542516
Alignment:
| Q |
206 |
acctcacgactttgattgaaagaaagaagaatttgcat |
243 |
Q |
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| T |
41542553 |
acctcacgactttgaaagaaagaaagaagaatttgcat |
41542516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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