View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14606_high_2 (Length: 681)
Name: NF14606_high_2
Description: NF14606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14606_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 321
Target Start/End: Original strand, 52193484 - 52193802
Alignment:
| Q |
12 |
caaagggaaacaaggataacaaatgccaaaggaaatgttcacaaaatgtagctacaagcattctaccggcacattgaaacaagtatcgtccacgtcctcg |
111 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52193484 |
caaagggaaacaaggataacaaatgccgaaggaaatgttcacaaaatgtagctacaagcattctaccggcacattgaaacaagtatcgtccacgtcctcg |
52193583 |
T |
|
| Q |
112 |
tcaacctgtaccagtttgctcaaaactttcaccggtgtgcattgagcttcaa---------catcatcatcatcttcaaaatcacacatatattgagata |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52193584 |
tcaacctgtaccagtttgctcaaaactttcaccggtgtgcattgagcttcaacatcatcatcatcatcatcatcttcaaaatcacacataaattgagata |
52193683 |
T |
|
| Q |
203 |
aagtaaataaaacctaaatcatgcaattgaaaattcacgaaagatttttgcatgaacgatcgatacctagatcaatgcaaacaaccttcgattgaggttt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52193684 |
aagtaaataaaacctaaatcatgcaattgaaaattcacgaaagatttttgcatgaacgatcgatacctagatcaatgcaaacaaccttcgattgaggttt |
52193783 |
T |
|
| Q |
303 |
tgaacgaaacacagctgta |
321 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
52193784 |
tgaacgaaacacagctgta |
52193802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 391 - 646
Target Start/End: Original strand, 52193871 - 52194126
Alignment:
| Q |
391 |
gagcaacaagagtgacttacatgcttgaagaaaatcgtattttaaaatgggaggagaaggagatttgacaggggttctgaattttctgagcattatctca |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
52193871 |
gagcaacaagagtgacttacatgcttgaagaaaatcgtattttgaaatgggaggagaaggagatttgacatgggttctgaattttctgagcattatctca |
52193970 |
T |
|
| Q |
491 |
ggaagattctcggttttcgattctaccttgaaatcgaagacatcgaattcggttttcgattctaccttgacatcaaagacatcgaatttgttgattgggg |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52193971 |
ggaagattctcggttttcgattctaccttgaaatcgaagacatcgaattcggttttcgattctaccttgacatcaaagacatcgaatttgttgattgggg |
52194070 |
T |
|
| Q |
591 |
aagaggatgcagaagatgaacgttgagtcatggagtgaatgagtgaaactacagaa |
646 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52194071 |
aagaggatgcagaagatgaacgttgagtcatggagtgaatgagtgaaactacagaa |
52194126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 402 - 491
Target Start/End: Complemental strand, 1964842 - 1964753
Alignment:
| Q |
402 |
gtgacttacatgcttgaagaaaatcgtattttaaaatgggaggagaaggagatttgacaggggttctgaattttctgagcattatctcag |
491 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||||||||| | |||||||| ||||||||||| |||| |||||| |
|
|
| T |
1964842 |
gtgacttacatgcttgaagaaattcgtatttcgaaatgggaggagaaggagatttcataggggttcggaattttctgaacattttctcag |
1964753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 1965028 - 1964936
Alignment:
| Q |
211 |
aaaacctaaatcatgcaattgaaaattcacgaaagatttttgcatgaacgatcgatacctagatcaatgcaaacaaccttcgattgaggttttgaac |
307 |
Q |
| |
|
|||||||||||||||||||||||||| | || || |||||||||||||||| ||||||||||||| |||||| | |||||||||||||||||| |
|
|
| T |
1965028 |
aaaacctaaatcatgcaattgaaaatgtaggagaggtttttgcatgaacgat----acctagatcaatggaaacaatcctcgattgaggttttgaac |
1964936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 566 - 636
Target Start/End: Complemental strand, 1964729 - 1964659
Alignment:
| Q |
566 |
aagacatcgaatttgttgattggggaagaggatgcagaagatgaacgttgagtcatggagtgaatgagtga |
636 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| | |||||||||| |||||||| ||| || ||||||| |
|
|
| T |
1964729 |
aagacgtcgaatttgttgattggggaagaggatgaacaagatgaacgctgagtcatcgagcgagtgagtga |
1964659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University