View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14606_high_3 (Length: 509)
Name: NF14606_high_3
Description: NF14606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14606_high_3 |
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| [»] scaffold0294 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 317
Target Start/End: Complemental strand, 15755609 - 15755312
Alignment:
| Q |
15 |
atcatcaagaggagggattgagatagatccatcaacaaaggaaagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgaggtagtta |
114 |
Q |
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| T |
15755609 |
atcatcaagaggagggattaggatagatccatcaacaaaggaaagcttgttcttggcgcctaaagcgcgtttcatagaatgatgcc----gaggtagtta |
15755514 |
T |
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| Q |
115 |
gaaccgtcaagaagaggcgtaactaacacagagccaggattttcacttggatgcacgtagtaaggtgaatcagtgttccgttgaaccacttgaggagctt |
214 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||| ||| |
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| T |
15755513 |
gaaccgtcaagaagaggtgtaactaaca-agagccaggattttcacttggatgcatgtagtaaggtgaatcagtgtttggttgaacaacttgaggatctt |
15755415 |
T |
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| Q |
215 |
gtcttggaggcatgatgaagacgaagcagaaagtagtaaaattgagaaaatagagtatgaagaaagacgaaggcgatgatacgtgaaacagtgaaacgaa |
314 |
Q |
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||||||||||||||||| ||||||||||| ||||||| ||||||||||| ||||||||||||||| ||||||||||||| | |||||| |||||||||| |
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| T |
15755414 |
ctcttggaggcatgatgaggacgaagcagagagtagtagaattgagaaaacagagtatgaagaaagccgaaggcgatgatgcatgaaacggtgaaacgaa |
15755315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 307 - 427
Target Start/End: Complemental strand, 15755270 - 15755150
Alignment:
| Q |
307 |
gaaacgaagaataatcggtgtcattcttcacgaaatcgagatgaattgagaaaagatgaaaatcttgaagttcacgcatcaatggcagaagctaactgaa |
406 |
Q |
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| T |
15755270 |
gaaacgaagaagaatcggtgtgattcttcacgaaatcgagatgaattgagaaaagatgaaaagcttgaagttcacgcatcaatggtgaaagctaactgaa |
15755171 |
T |
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| Q |
407 |
tcgtaacaaactcttctcaag |
427 |
Q |
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| T |
15755170 |
tcgtaacaaactcttctcaag |
15755150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 150 - 317
Target Start/End: Original strand, 5962 - 6130
Alignment:
| Q |
150 |
aggattttcacttggatgcacgtagtaaggtgaatcagtgttccgttgaaccacttgaggagcttgtcttggaggcatgatgaagacgaagcag-aaagt |
248 |
Q |
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|||||||||||| | |||||| |||||||||||||||||||| |||||| || ||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
5962 |
aggattttcactcgaatgcacatagtaaggtgaatcagtgtttggttgaataacccgaggagcttgtcttggaggcatgatgaggacgaagcagaaaagt |
6061 |
T |
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| Q |
249 |
agtaaaattgagaaaatagagtatgaagaaagacgaaggcgatgatacgtgaaacagtgaaacgaagaa |
317 |
Q |
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| T |
6062 |
agtagaattgagaaaacagaggaagaagaaaaacgaagtagatgatgcgtgaaacggtgaaaagaagaa |
6130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 333 - 430
Target Start/End: Original strand, 6197 - 6294
Alignment:
| Q |
333 |
ttcacgaaatcgagatgaattgagaaaagatgaaaatcttgaagttcacgcatcaatggcagaagctaactgaatcgtaacaaactcttctcaaggag |
430 |
Q |
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| T |
6197 |
ttcacgaaatcgagagaaattgagaaagcatgaaaagattgaagctcacacatcaatggcggaagctaactgaatcgtaacaaactcttctcaaggag |
6294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 7e-38; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 17118373 - 17118153
Alignment:
| Q |
15 |
atcatcaagaggagggattgagatagatccatcaacaaaggaaagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgaggtagtta |
114 |
Q |
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|||||||| ||||||||||| || |||||||||||||||||||| |||||||| || ||||| | || |||||||||||||||||||||||||||||| |
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| T |
17118373 |
atcatcaataggagggattggaattgatccatcaacaaaggaaagtttgttcttcgctcctaatgggcgcttcatagaacgatgccatgcgaggtagtta |
17118274 |
T |
|
| Q |
115 |
gaaccgtcaagaagaggcgtaactaacacagagccaggattttcacttggatgcacgtagtaaggtgaatcagtgttccgttgaaccacttgaggagctt |
214 |
Q |
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||||| ||||||||||| ||||||| |||| ||| || |||| | |||||||| || || |||||||||||||| |||||| | |||||||||| |
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| T |
17118273 |
gaaccatcaagaagaggtgtaactatcacatagcttggtccttcattaggatgcacataatacggtgaatcagtgtttgattgaacaatctgaggagctt |
17118174 |
T |
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| Q |
215 |
gtcttggaggcatgatgaaga |
235 |
Q |
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| T |
17118173 |
gacgaggagggatgatgaaga |
17118153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 13139795 - 13139970
Alignment:
| Q |
15 |
atcatcaagaggagggattgagatagatccatcaacaaaggaaagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgaggtagtta |
114 |
Q |
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||||||| ||||||||||| || |||||||||||||| ||| |||||||| || || || | | ||||||||||||| |||||||||||||| |
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| T |
13139795 |
atcatcagcaggagggattggaattgatccatcaacaaaatcaagtttgttcttcgctcccaactcacgcttcatagaacgatttcatgcgaggtagttg |
13139894 |
T |
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| Q |
115 |
gaaccgtcaagaagaggcgtaactaacacagagccaggattttcacttggatgcacgtagtaaggtgaatcagtgt |
190 |
Q |
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| T |
13139895 |
gaaccatcaagaagaggcgtaactagcacaaagttaggtccttcactaggatgcacgtaataaggaaaatcagtgt |
13139970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 17117978 - 17117909
Alignment:
| Q |
358 |
aaagatgaa-aatcttgaagttcacgcatcaatggcagaagctaactgaatcgtaacaaactcttctcaa |
426 |
Q |
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| T |
17117978 |
aaagatgaagaagcttgaggatcatgcatcaatggcggaagctaactgaatcgtaacaaactcctctcaa |
17117909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 26628758 - 26628696
Alignment:
| Q |
57 |
aagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgaggtagttagaacc |
119 |
Q |
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|||||| |||||||| |||||||| | || |||||||||| ||||||||||||||||||||| |
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| T |
26628758 |
aagcttattcttggcacctaaagcacgttgcatagaacgactccatgcgaggtagttagaacc |
26628696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 26734734 - 26734672
Alignment:
| Q |
57 |
aagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgaggtagttagaacc |
119 |
Q |
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|||||| |||||||| |||||||| | || |||||||||| ||||||||||||||||||||| |
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| T |
26734734 |
aagcttattcttggcacctaaagcacgttgcatagaacgactccatgcgaggtagttagaacc |
26734672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 425
Target Start/End: Original strand, 13140166 - 13140209
Alignment:
| Q |
382 |
gcatcaatggcagaagctaactgaatcgtaacaaactcttctca |
425 |
Q |
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| T |
13140166 |
gcatcaatggcagaagctaactgaatcgtaagtaactcctctca |
13140209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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