View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14607_high_1 (Length: 471)
Name: NF14607_high_1
Description: NF14607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14607_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 331
Target Start/End: Original strand, 52317669 - 52317988
Alignment:
| Q |
10 |
catcatcatatcatagctaaacaaaaagataaattaagaagaagaatatgtctgcatcaatcaccgcaatcactgtggagaaccttgaatacccagcggt |
109 |
Q |
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| T |
52317669 |
catcatcatatcatagctaaacaaa--gataaattaagaagaagaatatggctgcatcaatcaccgcaatcactgtggagaaccttgaatacccagcggt |
52317766 |
T |
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| Q |
110 |
ggttacatctccggtcaccggcaaatcatatttcctcggtggcgcaggggagagagggttgacaattgaaggaaacttcatcaagttcactgccataggt |
209 |
Q |
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| T |
52317767 |
ggttacatctccggtcaccggcaaatcatatttcctcggtggcgcaggggagagagggttgacaattgaaggaaacttcatcaagttcactgccataggt |
52317866 |
T |
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| Q |
210 |
gtttatttggaagatatagcagtggcttcactagctgccaaatggaagggtaaaacctctcaagagttactagagacccttgacttttacagagacatca |
309 |
Q |
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| T |
52317867 |
gtttatttggaagatatagcagtggcttcactagctgccaaatggaagggtaaaacctctcaagagttactagatacccttgacttttacagagacatca |
52317966 |
T |
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| Q |
310 |
tctcaggtatgttatacatcag |
331 |
Q |
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| T |
52317967 |
tctcaggtatgttatacatcag |
52317988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 378 - 453
Target Start/End: Original strand, 52318089 - 52318164
Alignment:
| Q |
378 |
taaattgataatgttttaggtccctttgaaaagttaattagagggtcaaagattagggaattgagtggtcctgagt |
453 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52318089 |
taaattgataatgttttaggtccctttgaaaagttaattagagggtcaaagattagggaattgagtggtcctgagt |
52318164 |
T |
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