View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14607_high_10 (Length: 306)

Name: NF14607_high_10
Description: NF14607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14607_high_10
NF14607_high_10
[»] chr5 (6 HSPs)
chr5 (10-287)||(37850158-37850435)
chr5 (19-276)||(37836796-37837047)
chr5 (23-195)||(37842490-37842662)
chr5 (19-280)||(37831088-37831343)
chr5 (23-167)||(28089388-28089532)
chr5 (227-287)||(37842404-37842464)
[»] chr7 (1 HSPs)
chr7 (19-280)||(36865539-36865794)


Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 10 - 287
Target Start/End: Complemental strand, 37850435 - 37850158
Alignment:
Q  10 tcgaagaatataggagaggattacccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaaga 109  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37850435 tcgaacaacataggagaggattacccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaaga 37850336  T
Q  110 aatattgacctcaattaatgaaacaagaccaccaagggcatctatgcttcctgttaaattgttcaaggatatatctagactttgcaattgctgcagtcct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37850335 aatattgacctcaattaatgaaacaagaccaccaagggcatctatgcttcctgttaaattgttcaaggatatatctagactttgcaattgctgcagtcct 37850236  T
Q  210 atccagtcaattcctgaaggaatgtcacctttcaatccattagcactaagattcaatccatagaacagattgcgcaat 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37850235 atccagtcaattcctgaaggaatgtcacctttcaatccattagcactaagattcaatccatagaacagattgcgcaat 37850158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 37837047 - 37836796
Alignment:
Q  19 ataggagaggattacccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattgac 118  Q
    |||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||| |||| ||||||||||||||||||||||||    
T  37837047 ataggaaaggattacccatgaatgatgatggtgaggaattcaataacctcattagacctgttggtacagatccattgaagagattgaaagaaatattgac 37836948  T
Q  119 ctcaattaatgaaacaagaccaccaagggcatctatgcttcctgttaaattgttcaaggatatatctagactttgcaattgctgcagtcctatccagtca 218  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||      ||||||| |   |  ||    
T  37836947 ctcaattaatgaaacaagacctccaagagcatctatgcttcctgttaaattgtttaaggatatatctagactttgca------gcagtccgagtaaacca 37836854  T
Q  219 attcctgaaggaatgtcacctttcaatccattagcactaagattcaatccatagaaca 276  Q
    ||| | ||||||||| ||||| ||||||||||| |||| ||||||| |||||||||||    
T  37836853 atttccgaaggaatgccacctgtcaatccattaccactcagattcagtccatagaaca 37836796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 37842662 - 37842490
Alignment:
Q  23 gagaggattacccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattgacctca 122  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||  ||||||||||||||||    
T  37842662 gagaggattacccatgaatgatgatggtgaggaattcaataacttcattagacctgttggtacagaaccattgaagagattgtgagaaatattgacctca 37842563  T
Q  123 attaatgaaacaagaccaccaagggcatctatgcttcctgttaaattgttcaaggatatatctagactttgca 195  Q
    ||||||||||||||||  ||||| || ||||||||||| || |||||||||||||||||||| ||||||||||    
T  37842562 attaatgaaacaagacttccaagtgcgtctatgcttcccgtcaaattgttcaaggatatatccagactttgca 37842490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 37831343 - 37831088
Alignment:
Q  19 ataggagaggattacccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattgac 118  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||||| |||||| |||||     
T  37831343 ataggagaggactacccatgaatgatgatggtgaggaattcagtaacttcattagacctgttggtacagaaccattgaagagattgtaagaaacattgat 37831244  T
Q  119 ctcaattaatgaaacaagaccaccaagggcatctatgcttcctgttaaattgttcaaggatatatctagactttgcaattgctgcagtcctatccagtca 218  Q
     ||| |||| ||||||||||   |||| |||| ||||||||||||||||||||||||||||||||| ||||||||||      ||||||||| |    ||    
T  37831243 atcagttaacgaaacaagactttcaagagcatatatgcttcctgttaaattgttcaaggatatatccagactttgca------gcagtcctagcttccca 37831150  T
Q  219 attcctgaaggaatgtcacctttcaatccattagcactaagattcaatccatagaacagatt 280  Q
    ||| |||||||||||   ||| | |||||||||| ||| |||||||||||||||||||||||    
T  37831149 atttctgaaggaatgctgcctgttaatccattagaactcagattcaatccatagaacagatt 37831088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 23 - 167
Target Start/End: Complemental strand, 28089532 - 28089388
Alignment:
Q  23 gagaggattacccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattgacctca 122  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||  ||||||| |||||| |||||||||| |||||||||||||||||    
T  28089532 gagaggattgcccatgaatgatgatggtgaggaattcaataaactcattagagctaatggtacaaaaccattgaagagattgtaagaaatattgacctca 28089433  T
Q  123 attaatgaaacaagaccaccaagggcatctatgcttcctgttaaa 167  Q
    ||||||||||||||| | ||||| ||||| ||| |||||| ||||    
T  28089432 attaatgaaacaagatctccaagagcatcgatgattcctgctaaa 28089388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 37842464 - 37842404
Alignment:
Q  227 aggaatgtcacctttcaatccattagcactaagattcaatccatagaacagattgcgcaat 287  Q
    ||||||| ||||| |||||||||||||||| | |||||| |||||||||| ||| ||||||    
T  37842464 aggaatgccacctatcaatccattagcactcaaattcaacccatagaacaaattacgcaat 37842404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 36865794 - 36865539
Alignment:
Q  19 ataggagaggattacccatgaatgatgatggtgaggaattcaataaattcattagaccttttggtacagaaccatggaagagattgaaagaaatattgac 118  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||  | ||||||| | ||||||||||||||| ||| |||||| || ||||||||||    
T  36865794 ataggagaggattacccatgaacgatgacggtgaggaattcaataacctaattagacgtgttggtacagaaccattgaaaagattgtaataaatattgac 36865695  T
Q  119 ctcaattaatgaaacaagaccaccaagggcatctatgcttcctgttaaattgttcaaggatatatctagactttgcaattgctgcagtcctatccagtca 218  Q
    |||||||||||||||||||||  |||| ||||||||||||||||| |||||||||||||||||||| |  |||||||      ||||||||| |    ||    
T  36865694 ctcaattaatgaaacaagaccttcaagagcatctatgcttcctgtcaaattgttcaaggatatatccaagctttgca------gcagtcctagcatccca 36865601  T
Q  219 attcctgaaggaatgtcacctttcaatccattagcactaagattcaatccatagaacagatt 280  Q
    ||| ||||||||||  ||||| ||||||||||| |||| |||||||||||||| ||||||||    
T  36865600 atttctgaaggaataccacctgtcaatccattatcactcagattcaatccataaaacagatt 36865539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University