View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14607_high_18 (Length: 248)
Name: NF14607_high_18
Description: NF14607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14607_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 31158997 - 31158761
Alignment:
| Q |
1 |
cgaatatgaacaatgattcaatgacacgtcaatacgagtaataatttgagaacacaaaaggattgaagatgttagaacatcaac-cgtaaaagaagaata |
99 |
Q |
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| T |
31158997 |
cgaatatgaacaatgattcaatgacacgtcaatacgagtaataatttgagaacacaaaaggattgaagatgttagaacatcaactcgtaaaagaagaata |
31158898 |
T |
|
| Q |
100 |
aagaaacacaaatcgcaaacaatgaaaaacgattagtttttggccaagtgtgccttcctatgcgcctacagagcagctataattttgcaacaccagacta |
199 |
Q |
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| T |
31158897 |
aagaaacacaaatcgcaaacaatgaaaaacgattagtttttggccaagtgtgccttcctatgcgcctacagagcagctgtagttttgcaacaccacacta |
31158798 |
T |
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| Q |
200 |
actcagctccctcgcctcttgtccctcttttatgcct |
236 |
Q |
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| T |
31158797 |
actcagctccctcgcctcttgtccctcttttatgcct |
31158761 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 17476284 - 17476230
Alignment:
| Q |
70 |
tgttagaacatcaacc-gtaaaagaagaataaagaaacacaaatcgcaaacaatg |
123 |
Q |
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| T |
17476284 |
tgttaaaacaacaaccagtaaaagaagaataaagaaacgcaaatcgcaaacaatg |
17476230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 47252792 - 47252756
Alignment:
| Q |
86 |
gtaaaagaagaataaagaaacacaaatcgcaaacaat |
122 |
Q |
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| T |
47252792 |
gtaaaagaagaataaagaaacgtaaatcgcaaacaat |
47252756 |
T |
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