View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14607_high_3 (Length: 447)
Name: NF14607_high_3
Description: NF14607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14607_high_3 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 15 - 430
Target Start/End: Original strand, 4773455 - 4773869
Alignment:
| Q |
15 |
gggttatgatggtctaatttgtaagagcacgatggtagttttcaatttggtttttatcgaaagtgtgaggatctctaatatccatcctactgagattcaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4773455 |
gggttatgatggtctaatttgtaagagcacgatggcagttttcaatttggtttttttcgaaagtgtgaggatctctaatatccatcctactgagattcaa |
4773554 |
T |
|
| Q |
115 |
gctctctagattggaatcaagttgtgttgggaggtcggctatnnnnnnncttatgtgttactctaactcccttcatgtggggcaattggtgtcgaagaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
4773555 |
gctctctagattggaatcaagttgtgttgggaggtcggctataaaaaa-cttatgtgttactctaactctcttcatgtggggcaattggtgtcgaagaac |
4773653 |
T |
|
| Q |
215 |
acttctcgtttccatcactatgcaaatatcttagaattcctctgaaactatcttgctaaggattggacggttactattcaccatatccttcgagaaggaa |
314 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4773654 |
acttctcgtttccatcaccatgcaaatatcttagaattcctctgaaactatcttgctaaggattggacggttactattcaccatatcctttgagaaggaa |
4773753 |
T |
|
| Q |
315 |
attcatgtgcagacattcttcctaagttgggagttgatagttcataccattttatcatagtcaatgaacctccctcttgtttatcttccgctttaatggg |
414 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
4773754 |
attcatgtgcagacgttcttcctaagttgggagttgatagttcataccattttatcacagtcaatgaacccccctcttgtttatcttccgctttaatggg |
4773853 |
T |
|
| Q |
415 |
ttttcttaggtgtgtt |
430 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4773854 |
ttttcttaggtgtgtt |
4773869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 164 - 412
Target Start/End: Complemental strand, 2465810 - 2465562
Alignment:
| Q |
164 |
cttatgtgttactctaactcccttcatgtggggcaattggtgtcgaagaacacttctcgtttccatcactatgcaaatatcttagaattcctctgaaact |
263 |
Q |
| |
|
||||||||||||||| ||| |||||||||| | |||||||||||||| | | ||| | |||||||||||||||||||||||| ||| || || ||||| |
|
|
| T |
2465810 |
cttatgtgttactctgactatcttcatgtggtgtaattggtgtcgaaggagatttcacatttccatcactatgcaaatatcttggaactcatccaaaact |
2465711 |
T |
|
| Q |
264 |
atcttgctaaggattggacggttactattcaccatatccttcgagaaggaaattcatgtgcagacattcttcctaagttgggagttgatagttcatacca |
363 |
Q |
| |
|
|| ||||||||||||||| ||||| || ||||||| |||||||| ||||| ||||||||| |||| |||||||||||| | ||||||||||||| |
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|
| T |
2465710 |
attttgctaaggattggaaacttactgttactcatatccctcgagaagaaaatttatgtgcagatgttctcactaagttgggagctaatagttcatacca |
2465611 |
T |
|
| Q |
364 |
ttttatcatagtcaatgaacctccctcttgtttatcttccgctttaatg |
412 |
Q |
| |
|
| || |||| |||||||| |||||||||||||||| || |||||||| |
|
|
| T |
2465610 |
tcttgtcatggtcaatgagtctccctcttgtttatcatctactttaatg |
2465562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 36353946 - 36353816
Alignment:
| Q |
15 |
gggttatgatggtctaatttgtaagagcacgatggtagttttcaatttggtttttatcgaaagtgtgaggatctctaatatccatcctactgagattcaa |
114 |
Q |
| |
|
|||||||| |||||||||| ||||| ||| ||| ||||||||||||| ||| | | | | | ||| ||||||||||||||| || | |||||||| | |
|
|
| T |
36353946 |
gggttatggtggtctaattcgtaag--cactatgacagttttcaatttgatttctttggta-gagtggggatctctaatatccttcatgctgagatttag |
36353850 |
T |
|
| Q |
115 |
gctctctagattggaatcaagttgtgttgggagg |
148 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||| |
|
|
| T |
36353849 |
gctctttagtttggaatcaagttgtgttgggagg |
36353816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 9e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 15 - 399
Target Start/End: Original strand, 26487434 - 26487813
Alignment:
| Q |
15 |
gggttatgatggtctaatttgtaagagcacgatggtagttttcaatttggtttttatcgaaagtgtgaggatctctaatatccatcctactgagattcaa |
114 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||| || | ||| ||| ||||||||| ||||||||||| |||||| |||||||| || | ||||||||||| |
|
|
| T |
26487434 |
gggttatggtggtctaattagtaag--cacgacggcaatttccaacttggttttt-tcgaaagtgtggggatctttaatatccttcatgctgagattcaa |
26487530 |
T |
|
| Q |
115 |
gctctctagattggaatcaagttgtgttgggaggtcggctatnnnnnnncttatgtgttactctaactcccttcatgtggggcaattggtgtcgaagaac |
214 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||| |||||| ||||||||||||||| |||| |||||||||| |||||||||||||| | || |
|
|
| T |
26487531 |
gctctctggattggaattaagttgtgttgggaggcaggctataaaaaa-cttatgtgttactctgactctcttcatgtggtgcaattggtgtcgacggac |
26487629 |
T |
|
| Q |
215 |
acttctcgtttccatcactatgcaaatatcttagaattcctctgaaactatcttgctaaggattggacggttactattcaccatatccttcgagaaggaa |
314 |
Q |
| |
|
|| | ||||||||||| |||||||||||||| || | || ||||||| ||||||||||||| ||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
26487630 |
acaccacgtttccatcattatgcaaatatcttgaaacttatcggaaactaccttgctaaggatttgacagttactatttaccatatccttcgagaaggaa |
26487729 |
T |
|
| Q |
315 |
attcatgtgcagacattcttcctaagttgggagttgatagttcataccattttatcatagtcaatgaacctccctcttgtttatc |
399 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| | || ||||||| || || ||| ||||||||| ||||||||| |||||| |
|
|
| T |
26487730 |
attcatgtgcagacgttctcgctaagttggga-ctaatggttcataatatcttgtcacggtcaatgaatctccctcttatttatc |
26487813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 399
Target Start/End: Complemental strand, 44404011 - 44403632
Alignment:
| Q |
14 |
cgggttatgatggtctaatttgtaagagcacgatggtagttttcaatttggtttttatcgaaagtgtgaggatctctaatatccatcctact-gagattc |
112 |
Q |
| |
|
||||| ||| |||||||||| ||||| |||||||| | |||||| ||||||||| |||||| | || ||||||||||||||| || | | ||||||| |
|
|
| T |
44404011 |
cgggtgatggtggtctaattagtaag--cacgatggcaactttcaacttggttttt-tcgaaa-tatggggatctctaatatccttcatgccagagattc |
44403916 |
T |
|
| Q |
113 |
aagctctctagattggaatcaagttgtgttgggaggtcggctatnnnnnnncttatgtgttactctaactcccttcatgtggggcaattggtgtcgaaga |
212 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||| | |||| |||||||| |||| | |||| |||||||||| | |||||||||| ||| |
|
|
| T |
44403915 |
tagctctctggattggaatcaaattgtgttgggaggcagactataaaaaa-cttatgtgctactatgactctcttcatgtggtgtaattggtgtcaaagg |
44403817 |
T |
|
| Q |
213 |
acacttctcgtttccatcactatgcaaatatcttagaattcctctgaaactatcttgctaaggattggacggttactattcaccatatccttcgagaagg |
312 |
Q |
| |
|
| ||| | ||||||||||| ||||||||||||| || || || |||||||||||||||||||||||| |||||||| ||||||| ||||||||| | |
|
|
| T |
44403816 |
atactccaggtttccatcaccatgcaaatatcttgaaactcatccgaaactatcttgctaaggattgga-aattactatttaccatat-cttcgagaacg |
44403719 |
T |
|
| Q |
313 |
aaattcatgtgcagacattcttcctaagttgggagttgatagttcataccattttatcatagtcaatgaacctccctcttgtttatc |
399 |
Q |
| |
|
|||||||||||||||| |||| |||||| || || | |||||| | ||||| ||||||| || |||||||||||||| | |||||| |
|
|
| T |
44403718 |
aaattcatgtgcagacgttctcgctaagtgggaagctaatagtttagaccatcttatcatggttaatgaacctccctcctatttatc |
44403632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 164 - 413
Target Start/End: Complemental strand, 2904327 - 2904078
Alignment:
| Q |
164 |
cttatgtgttactctaactcccttcatgtggggcaattggtgtcgaagaacacttctcgtttccatcactatgcaaatatcttagaattcctctgaaact |
263 |
Q |
| |
|
||||| ||||||| | |||| |||||| ||| || |||||||||||||||||||| |||||||||||||||||||||||||| ||| || |||| |||| |
|
|
| T |
2904327 |
cttatatgttactttgactctcttcatatggtacatttggtgtcgaagaacacttcacgtttccatcactatgcaaatatcttggaactcatctggaact |
2904228 |
T |
|
| Q |
264 |
atcttgctaaggattggacggttactattcaccatatccttcgagaaggaaattcatgtgcagacattcttcctaagttgggagttgatagttcatacca |
363 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||||| ||||| |||||||||||||| |||| || |||| |||||||||||| | ||| |||| |||| |
|
|
| T |
2904227 |
atcttagtaaggattggacagttactagtcaccatacccttcaagaaggaaattcatatgcaaacgttctcgctaagttgggagctaataattcagacca |
2904128 |
T |
|
| Q |
364 |
ttttatcatagtcaatgaacctccctcttgtttatcttccgctttaatgg |
413 |
Q |
| |
|
| |||||| ||||||| | |||| ||| |||||| | |||||||||| |
|
|
| T |
2904127 |
tcttatcacggtcaatgggcttcccccttatttatcatttgctttaatgg |
2904078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 164 - 381
Target Start/End: Complemental strand, 50654703 - 50654486
Alignment:
| Q |
164 |
cttatgtgttactctaactcccttcatgtggggcaattggtgtcgaagaacacttctcgtttccatcactatgcaaatatcttagaattcctctgaaact |
263 |
Q |
| |
|
||||| ||||||||| |||| ||||||||| ||||||| ||||||| || || | |||||||||||||||||||||||||| || || || | |||| |
|
|
| T |
50654703 |
cttatttgttactctgactctcttcatgtgatgcaattgatgtcgaatgactctccacgtttccatcactatgcaaatatcttgaaactcatccggaact |
50654604 |
T |
|
| Q |
264 |
atcttgctaaggattggacggttactattcaccatatccttcgagaaggaaattcatgtgcagacattcttcctaagttgggagttgatagttcatacca |
363 |
Q |
| |
|
||| |||| ||| |||||| ||||||||||| |||||||| ||||||| |||||||||||||||| ||||| ||||| || ||| | ||||||| |||| |
|
|
| T |
50654603 |
atcctgcttagggttggacagttactattcatcatatcctacgagaagaaaattcatgtgcagacgttcttgctaagctgagagctagtagttcagacca |
50654504 |
T |
|
| Q |
364 |
ttttatcatagtcaatga |
381 |
Q |
| |
|
| || ||| |||||||| |
|
|
| T |
50654503 |
tcttgtcacggtcaatga |
50654486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 50654769 - 50654727
Alignment:
| Q |
105 |
tgagattcaagctctctagattggaatcaagttgtgttgggag |
147 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
50654769 |
tgaggttcaagctctctggattggaatcaagttatgttgggag |
50654727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 2904431 - 2904339
Alignment:
| Q |
18 |
ttatgatggtctaatttgtaagagcacgatggtagttttcaatttggtttttatcgaaagtgtgaggatctctaatatccatcctactgagattcaa |
114 |
Q |
| |
|
||||| |||||||||||| ||| ||| |||| ||||||||| ||||||||| |||||| |||| |||||||||||||| || | ||||||||||| |
|
|
| T |
2904431 |
ttatggtggtctaatttgcaag--cacaatggcagttttcaacttggttttt-tcgaaa-tgtggagatctctaatatccttcttgctgagattcaa |
2904339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 285 - 399
Target Start/End: Complemental strand, 2147845 - 2147731
Alignment:
| Q |
285 |
ttactattcaccatatccttcgagaaggaaattcatgtgcagacattcttcctaagttgggagttgatagttcataccattttatcatagtcaatgaacc |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||| |||| |||||||| ||||| ||||| |||||||| | |
|
|
| T |
2147845 |
ttactattcaccatatccttcgagaaggaatttcatgtgcagacgttctctttaagttggtagttaatagttcagaccatcctatcacggtcaatgagtc |
2147746 |
T |
|
| Q |
385 |
tccctcttgtttatc |
399 |
Q |
| |
|
|||| ||| |||||| |
|
|
| T |
2147745 |
tcccccttatttatc |
2147731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 2147993 - 2147918
Alignment:
| Q |
168 |
tgtgttactctaactcccttcatgtggggcaattggtgtcgaagaacacttctcgtttccatcactatgcaaatat |
243 |
Q |
| |
|
||||||||||| |||| ||||||||| |||||||||||||||| ||||| | ||||||||||||||||||||||| |
|
|
| T |
2147993 |
tgtgttactctgactctcttcatgtgatgcaattggtgtcgaaggacactccacgtttccatcactatgcaaatat |
2147918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 3241241 - 3241193
Alignment:
| Q |
17 |
gttatgatggtctaatttgtaagagcacgatggtagttttcaatttggttt |
67 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||| ||||||| |
|
|
| T |
3241241 |
gttatgatggtctaatttgta--agcacgatggaagttttcaacttggttt |
3241193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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