View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14607_low_1 (Length: 635)
Name: NF14607_low_1
Description: NF14607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14607_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 18 - 625
Target Start/End: Complemental strand, 39251361 - 39250754
Alignment:
| Q |
18 |
taaaattcacaaagaaaggaatgttgcattcaaatctaggtttcgaatttgaataccccctaaaagaaagagtttaataatactttgattctaaaggcta |
117 |
Q |
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| T |
39251361 |
taaaattcacaaagaaaggaatgttccattcaaatctaggtttcgaatttgaataccccctaaaagaaagagtttaataatactttgtttctaaaggcta |
39251262 |
T |
|
| Q |
118 |
gagtataagcttgtataatctaattttaccagatacctcaaccactaattttactgaacacttcatattcaatctactattggctatcaactaaaatatc |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39251261 |
gagtataagcttgtatgatctaattttaccagatacctcaaccactaattttactgaacacttcatattcaatctactattggctatcaactaaaatatc |
39251162 |
T |
|
| Q |
218 |
cgctataagctcatccactatcagctactttttaccaaacaaagcttaaataggatacaaattttcccagttcaaacatatgttatatatcaccattttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39251161 |
cgctataagctcatccactatcagctactttttaccaaacaaagcttaaataggatacaaattttcccagttcaaacatatgttatatatcaccattttc |
39251062 |
T |
|
| Q |
318 |
tttcgttaatttaaaatatttcctatttgtttgaaatacaaatcaacttccatgggcaatctgtggttataggtttgtgcaccttccagtctttgaaaaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39251061 |
tttcgttaatttaaaatatttcctatttgtttgaaatacaaatcaacttccatgggcaatctgtggttataggtttgtgcaccttccagtctttgaaaaa |
39250962 |
T |
|
| Q |
418 |
gaccaacttaactagactctatgtgcgactgtgttatgattaacctactttgatgacattaattagtaattggtgaagcatcttcatttccacaataann |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39250961 |
gaccaacttaactagactctatgtgcgactgtgttatgattaacctactttgatgacattaattagtaattggtgaagtatcttcatttccacaataatt |
39250862 |
T |
|
| Q |
518 |
nnnnnnnnnnatgaatgattcagtttcgtggctctgaggtcattgaacttcaaaattttgagcctgcttctaccgacgacattgcaagtgtgcatgcaag |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39250861 |
ttttatttttatgaatgattcagtttcgtggctctgaggtcattgaacttcaaaattttgagcctgcttctaccgacgacattgcaagtgtgcatgcaag |
39250762 |
T |
|
| Q |
618 |
agcctatg |
625 |
Q |
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|||||||| |
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| T |
39250761 |
agcctatg |
39250754 |
T |
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