View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14607_low_11 (Length: 387)
Name: NF14607_low_11
Description: NF14607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14607_low_11 |
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| [»] scaffold2079 (1 HSPs) |
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| [»] scaffold1112 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 7e-62; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 95 - 306
Target Start/End: Complemental strand, 6242388 - 6242177
Alignment:
| Q |
95 |
agacagtgacccat-aaaaacgtttaatacgaattcgttttatactatagttctcgattgagaaacttcacgaccaaagagtaaacaagattgaaccggt |
193 |
Q |
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| T |
6242388 |
agacagtgacccattaaaaacgtttaatacgaattcgttttatactatagttctcgattga--aatttcttgtccaacgagcaaagaaaattgaacctgt |
6242291 |
T |
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| Q |
194 |
cccaccaaatagatttccatttattccttcatttttatatt--tagtttttgtctttaatcttgtaaatgtttgacatttttccaacttgtgcatttgag |
291 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| |||||||| |
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| T |
6242290 |
cccaccaaatagatt-ccatttattccttcatttttatattgttagtttttgtctttaatcttttaaatgtttgacattttttcaacttgttcatttgag |
6242192 |
T |
|
| Q |
292 |
caaagtcacacaatt |
306 |
Q |
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|| ||||||| |||| |
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| T |
6242191 |
catagtcacataatt |
6242177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 144
Target Start/End: Original strand, 6333888 - 6333977
Alignment:
| Q |
55 |
aagaaaaaacatggaaaaagaggtttgacacaatttgga-aagacagtgacccataaaaacgtttaatacgaattcgttttatactatagt |
144 |
Q |
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| T |
6333888 |
aagaaaaaacagggaaaaagaggtatgacacaatttggatgagaaagtgacccatttaaacgtttaatacgaa-tcgttttatacgatagt |
6333977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 154
Target Start/End: Original strand, 6326397 - 6326500
Alignment:
| Q |
55 |
aagaaaaaacatggaaaaagaggtttgacacaatttggaaa------gacagtgacccataaaaacgtttaatacgaattcgttttatactatagttctc |
148 |
Q |
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| T |
6326397 |
aagaaaagacatggaaaaagaggcttgacacactttggaaagatagtgaaagtgacccat-taaacgtttaatacgaa-tcgttttatacgatagtattc |
6326494 |
T |
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| Q |
149 |
gattga |
154 |
Q |
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|||||| |
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| T |
6326495 |
gattga |
6326500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 6330641 - 6330679
Alignment:
| Q |
99 |
agtgacccataaaaacgtttaatacgaattcgttttatac |
138 |
Q |
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| T |
6330641 |
agtgacccataaaa-cgtttaatacgaattcgttttatac |
6330679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 6347119 - 6347157
Alignment:
| Q |
99 |
agtgacccataaaaacgtttaatacgaattcgttttatac |
138 |
Q |
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| T |
6347119 |
agtgacccataaaa-cgtttaatacgaattcgttttatac |
6347157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 55 - 298
Target Start/End: Complemental strand, 612 - 372
Alignment:
| Q |
55 |
aagaaaaaacatggaaaaagaggtttgacacaatttggaa-agacagtgacccataaaaacgtttaatacgaattcgttttatactatagttctcgattg |
153 |
Q |
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|||||||||||||||||| ||| | ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
612 |
aagaaaaaacatggaaaaggagctatgaaacaatttgcatgagacagtgacccataaaaacgtttaatacgaattcgttttatactata---ctcgattg |
516 |
T |
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| Q |
154 |
agaaacttcacgaccaaagagtaaacaagattgaaccggtcccaccaaatagatttccatttattccttcatttttatatt--tagtttttgtctttaat |
251 |
Q |
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| T |
515 |
a--actttcttgtccaacgagcaaaaacaattgaacctgtcccaccaaatagatt-ccatttattccttcatttttatattgttagtttttgtctttaat |
419 |
T |
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| Q |
252 |
cttgtaaatgtttgacatttttccaacttgtgcatttgagcaaagtc |
298 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
418 |
cttttaaatgtttgacatttttccaacttgtgcatttgagcatagtc |
372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 161 - 121
Alignment:
| Q |
99 |
agtgacccataaaaacgtttaatacgaattcgttttatacta |
140 |
Q |
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| T |
161 |
agtgacccataaaa-cgtttaatacgaattcgttttatacta |
121 |
T |
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