View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14607_low_14 (Length: 356)
Name: NF14607_low_14
Description: NF14607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14607_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 341
Target Start/End: Original strand, 8830848 - 8831179
Alignment:
| Q |
13 |
agcataggaggagtggacggcatagacaaagtgaaggagaaggtgtgggatgacatgattgtggttcgaagaaggaggaggagaagcctgtgaagtgtga |
112 |
Q |
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| T |
8830848 |
agcatagaaggagtggacggcatagacacagtgaaggagaaggtgtgggatgacatgattgtggttcgaagaaggaggaggagaagcctgcgaagtgtga |
8830947 |
T |
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| Q |
113 |
ggattttgtttttgttaagacgcatattacttacattaggcagtaccttttaaggaaacgaatctcctcaggtgggtgggttcataagtaaaatctgtca |
212 |
Q |
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| T |
8830948 |
ggtttttgtttttgttaagacacatattacttacattaggcagta-------aggaaacgaatctcctcaggtgggtgggttcataagtaaaatctgtca |
8831040 |
T |
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| Q |
213 |
catgtacctattgtgtttggttcttgacaatttcaatctggttttgacccgaaccaataaacaacgggtgatttac----------gggttggtttgtcg |
302 |
Q |
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| T |
8831041 |
catgtacctattgtgtttggttcttgacaatttcaatctggttttgacccgaaccaataaacaacgggtgatttacgggttgggttgggttggtttgtcg |
8831140 |
T |
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| Q |
303 |
ggtacaatggatttatctgggccacttacacccctaact |
341 |
Q |
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| T |
8831141 |
ggtacaatggatttatccgggccacttacacccctaact |
8831179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 43989602 - 43989682
Alignment:
| Q |
208 |
tgtcacatgtacctattgtgtttggttcttgacaatttcaatctggttttgacccgaaccaataaacaacgggtgatttac |
288 |
Q |
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| T |
43989602 |
tgtcacctgaacctattgtttttggttcttgacagtttggatttggttttgactcgaactaataaacaacaggtaatttac |
43989682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 43985044 - 43985092
Alignment:
| Q |
45 |
gaaggagaaggtgtgggatgacatgattgtggttcgaagaaggaggagg |
93 |
Q |
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| T |
43985044 |
gaaggagaaggcgtgggatgacatgatcatgggtcgaagaaggaggagg |
43985092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 44003244 - 44003292
Alignment:
| Q |
292 |
ttggtttgtcgggtacaatggatttatctgggccacttacacccctaac |
340 |
Q |
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| T |
44003244 |
ttggtttgtcgggttcaatggatttatcctgtccacttacacccctaac |
44003292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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