View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14607_low_15 (Length: 352)

Name: NF14607_low_15
Description: NF14607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14607_low_15
NF14607_low_15
[»] chr5 (1 HSPs)
chr5 (18-311)||(10850313-10850606)


Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 10850313 - 10850606
Alignment:
Q  18 atttgattgcagaaacatcatcaattctagatgattcctgtttcacccattggacaaccctatctgcttcaatatttaccttcttttcctcttccaaagc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10850313 atttgattgcagaaacatcatcaattctagatgattcctgtttcacccattggacaaccctatctgcttcaatatttaccttcttttcctcttccaaagc 10850412  T
Q  118 tttctgcagcctcctttcttgttctttaacagaaaaagtgctcatatcagataatatttcatcattctttttccattcaacgtggcctgaacttgaaact 217  Q
    ||||| ||||||||||||||||||||| || || |||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| |||||||||    
T  10850413 tttcttcagcctcctttcttgttctttgaccgagaaagtgctcatatcagataatatttcgtcattctttttccattcaacctggtctgaccttgaaact 10850512  T
Q  218 ccactgcttttattaatccttgcaacatcctttttgttagagaaacaaaaacaacatgaagttgatccttctgagtactctggttccatcatat 311  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10850513 ccactgcttttgttaacccttgcaacatcctttttgttggagaaacaaaaacaacaagaagttgatccttctgagtactctggttccatcatat 10850606  T

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