View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14607_low_16 (Length: 332)
Name: NF14607_low_16
Description: NF14607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14607_low_16 |
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| [»] scaffold0777 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 163 - 314
Target Start/End: Original strand, 24929767 - 24929918
Alignment:
| Q |
163 |
caccgcttattctcggcgccgctggtgataaaagaaccgtcagaacatgattctgatacaaagcagaaaaaactaaagagaaaattcacttcagaaagct |
262 |
Q |
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| T |
24929767 |
caccgcttattctcggcgccgctagtgataaaagaaccgtcagaacatgattctgatacaaagcagaaaaaactaaagagaaaatccacttcagaaagct |
24929866 |
T |
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| Q |
263 |
acgatgaaaagatgaagaaaccattaatcattgatgacgagccagaagaatt |
314 |
Q |
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| T |
24929867 |
atgatgaaaagatgaagaaaccattaatcattgatgacgagccagaagaatt |
24929918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 112; Significance: 1e-56; HSPs: 6)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 163 - 314
Target Start/End: Complemental strand, 2166 - 2015
Alignment:
| Q |
163 |
caccgcttattctcggcgccgctggtgataaaagaaccgtcagaacatgattctgatacaaagcagaaaaaactaaagagaaaattcacttcagaaagct |
262 |
Q |
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| T |
2166 |
caccgctcattctccgcgccactagtgataaaagaaccgtcagaacatgactctgatgcaaagcagaagaaactaaagagaaaatccacttcagaaagct |
2067 |
T |
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| Q |
263 |
acgatgaaaagatgaagaaaccattaatcattgatgacgagccagaagaatt |
314 |
Q |
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| T |
2066 |
acgatgaaaagatgaagaaaccattaatcattgatgaggaaccagaagaatt |
2015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 2328 - 2256
Alignment:
| Q |
163 |
caccgcttattctcggcgccgctggtgataaaagaaccgtcagaacatgattctgatacaaagcagaaaaaac |
235 |
Q |
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| T |
2328 |
caccgctcattctccgcgccactagtgataaaagaaccgtcagaacatgactctgatgcaaaggagaagaaac |
2256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 2482 - 2418
Alignment:
| Q |
171 |
attctcggcgccgctggtgataaaagaaccgtcagaacatgattctgatacaaagcagaaaaaac |
235 |
Q |
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| T |
2482 |
attctcggcgccgttagtgataaaagaacagtcagaacatgattctgatgcaaaggagaagaaac |
2418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 2611 - 2560
Alignment:
| Q |
48 |
agattctcaggcaaaggagaagaaaccaaacatgatgaagagaaaaccactt |
99 |
Q |
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| T |
2611 |
agattctaatgcaaaggagaagaaaccaaacatgatgaagagaaaatcactt |
2560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 2447 - 2380
Alignment:
| Q |
44 |
aacaagattctcaggcaaaggagaagaaaccaaacatgatgaagagaaaaccacttcgagatgcctat |
111 |
Q |
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| T |
2447 |
aacatgattctgatgcaaaggagaagaaaccacacatggtgaagagaaaatcacttccagatggctat |
2380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 2271 - 2218
Alignment:
| Q |
58 |
gcaaaggagaagaaaccaaacatgatgaagagaaaaccacttcgagatgcctat |
111 |
Q |
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| T |
2271 |
gcaaaggagaagaaaccatacatgttgaagagaaaatcacttccagatggctat |
2218 |
T |
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