View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14607_low_19 (Length: 313)
Name: NF14607_low_19
Description: NF14607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14607_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 48568014 - 48568307
Alignment:
| Q |
1 |
gcctcaagagagttgaaatgatgtaaacagaattaagaatggaaataagaaaagaacaaaaatttgacttatttgctagatcccacttattggatgtgtt |
100 |
Q |
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| T |
48568014 |
gcctcaagagagttgaaatgatttaaacagaattaagaatggaaataagaaaagaacaaaaatttgacttatttgctagatcacacttattggatgtgtt |
48568113 |
T |
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| Q |
101 |
tttgatgtaaaaataataaactttgatattttttcacatgtttctctcgttatcttcatccattttcgttcgtccatactttaagtgatgtcacactttg |
200 |
Q |
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| T |
48568114 |
tttgatgtaaaaataataaactttgatattttttcacatgtttctctcgttatcttcatccattttcgttcgtccatactttaagtgatgtcacactttg |
48568213 |
T |
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| Q |
201 |
caaactacagatacatttcttttcatctatccttgtgaaaattatgttacttccagggggaaaggtgattatcagattgactatgtaccagcac |
294 |
Q |
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| T |
48568214 |
caaactacagatacatttcttttcatctatccttgtgaaaattatgttacttccagggggaaaggtgattatcagattgactatgtaccagcac |
48568307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 10823055 - 10823012
Alignment:
| Q |
251 |
ttccagggggaaaggtgattatcagattgactatgtaccagcac |
294 |
Q |
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| T |
10823055 |
ttccagggggaaaggtgattatcagattgactatgtgccagcac |
10823012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 36144282 - 36144325
Alignment:
| Q |
251 |
ttccagggggaaaggtgattatcagattgactatgtaccagcac |
294 |
Q |
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| T |
36144282 |
ttccagagggaaaggtgattatcagattgactatgtgccagcac |
36144325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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