View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14607_low_2 (Length: 626)
Name: NF14607_low_2
Description: NF14607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14607_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 16 - 620
Target Start/End: Original strand, 9436532 - 9437141
Alignment:
| Q |
16 |
gcatcttcgtctgttatttaaacatctttacctaaattaatacggcttcatctgcttgacacaaacaacgtatcatctggtcatgagtcactcccttaca |
115 |
Q |
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| T |
9436532 |
gcatcttcttctgttatttaaacttctttacctaaattaatatggcttcatctgcttgacacaaacaacgtatcatctggtcatgagtcactcccttaca |
9436631 |
T |
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| Q |
116 |
attcctatacatcatttacttacaaaccccttaatcggtataacgtggtatcgatgttgtgaagtataagttcagtgacaagaggatcactgtgaaatta |
215 |
Q |
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| T |
9436632 |
attcctatacatcatttacttacaaaccccttaatcggtataacgtggtttcgatgttgtgaagtataagttcagtaacaagaggatcactgtgaaatta |
9436731 |
T |
|
| Q |
216 |
gtgcat-----aatagggtgtttattaagcgcaga-tgtagtgctctgataataaataaggatttaggagttacaattagagtttatatttgaattctct |
309 |
Q |
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| T |
9436732 |
gtgcattgagtaatagg-tgtttattaaacgcagaatgtagtgctctgataataaataaggatttaggagctacaattagagtttatattggaattctct |
9436830 |
T |
|
| Q |
310 |
tatagtcatgttcttcttgaagtttattctctcaaatgttatcaatttaactttattcttattaattgcaaatcttgagaagcaattcaacacttgtaaa |
409 |
Q |
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| T |
9436831 |
tatagtcatgttcttcttgaaatttattctctcaaatgttatcaatttaactttattcttattaattgcaaatcttgagaagcaattcaacacttgtaaa |
9436930 |
T |
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| Q |
410 |
cctatcactcttctaatatcttagtggattaaactttattcatatatttcgtttcaacatttgtgttacaccgttcaatcgaaagtttataacatataac |
509 |
Q |
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| T |
9436931 |
cctatcactcttctaatatcttagtggattaaactttattcatatatttcgtttcaacatttgtgttacaccgttcaatcgaaagtttataacatataac |
9437030 |
T |
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| Q |
510 |
ctctgtaaatctttgcaaaaatattaaactattttctataaaagtacatcaagattaacggacgtcacacctaattatatgtaagatgttaatcttgcag |
609 |
Q |
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| T |
9437031 |
ctctgtaaatctttgcaaaaatattaaactattttctattaaagtacatcaaaattaacggacgtcacacctaattatatgtaagatgttaatcttgcag |
9437130 |
T |
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| Q |
610 |
cacctgatatt |
620 |
Q |
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| T |
9437131 |
cacgtgatatt |
9437141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 9389950 - 9390006
Alignment:
| Q |
70 |
cttgacacaaacaacgtatcatctggtcatgagtcactcccttacaattcctataca |
126 |
Q |
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| T |
9389950 |
cttgacacaaaaaacgcatcatctgatcatgaatcactctcttacaattcatataca |
9390006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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