View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14607_low_20 (Length: 309)
Name: NF14607_low_20
Description: NF14607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14607_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 101 - 303
Target Start/End: Complemental strand, 39036869 - 39036669
Alignment:
| Q |
101 |
gtttgtctgtttccaagttctaacaccacaccatcactcataagggttatcataactctttctccatctggttgttaaattcataacgttgttgtgtatc |
200 |
Q |
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| T |
39036869 |
gtttgtctgtttccaagttctaacaccacaccatcactcataagggttatcataactctttctccatctggttgttaaattcataacgttgttgtgtatc |
39036770 |
T |
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| Q |
201 |
cagtgaaattaaataaaacattctcnnnnnnngtctatgtaactctgtattaatattgctaccttaggggagctgaattatattgcatggtacgtactac |
300 |
Q |
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| T |
39036769 |
cagtgaaattaaataaaacattctctttttttgtctatgtaactctgtat--atattgctaccttaggggagctgaattatattgcatggtacgtactac |
39036672 |
T |
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| Q |
301 |
tat |
303 |
Q |
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||| |
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| T |
39036671 |
tat |
39036669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 39036914 - 39036874
Alignment:
| Q |
23 |
aataatataaaaatctaattccaataatttgttcatgttgt |
63 |
Q |
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| T |
39036914 |
aataatataagaatctaattccaataatttgttcatgttgt |
39036874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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