View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14607_low_21 (Length: 308)

Name: NF14607_low_21
Description: NF14607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14607_low_21
NF14607_low_21
[»] chr8 (5 HSPs)
chr8 (128-294)||(42698889-42699055)
chr8 (46-128)||(41525185-41525267)
chr8 (47-127)||(42424128-42424208)
chr8 (45-83)||(3895562-3895600)
chr8 (48-128)||(174995-175075)
[»] chr7 (2 HSPs)
chr7 (1-127)||(37395740-37395866)
chr7 (48-128)||(11612019-11612099)
[»] chr1 (1 HSPs)
chr1 (1-125)||(13414162-13414286)
[»] scaffold0494 (1 HSPs)
scaffold0494 (9-127)||(583-701)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-125)||(280698-280822)
[»] chr6 (3 HSPs)
chr6 (46-129)||(6126457-6126540)
chr6 (46-127)||(14904655-14904736)
chr6 (54-127)||(26603550-26603623)
[»] scaffold0062 (1 HSPs)
scaffold0062 (54-128)||(69586-69660)
[»] chr2 (2 HSPs)
chr2 (54-128)||(15721029-15721103)
chr2 (92-126)||(45032455-45032489)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 128 - 294
Target Start/End: Original strand, 42698889 - 42699055
Alignment:
Q  128 aatagtagtggttaacccaaataaacattttagaattatagtagagtagtaaatctcaaggttggtagctcaatagatttatgacagcggataaggagtt 227  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42698889 aatactagtggttaacccaaataaacattgtagaattatagtagagtagtaaatctcaaggttggtagctcaattgatttatgacagcggataaggagtt 42698988  T
Q  228 gtagcagataaggagtataaattcagatatagtataaatttgattacttaacatgaccttataagtg 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42698989 gtagcagataaggagtataaattcagatatagtataaatttgattacttaacatgaccttataagtg 42699055  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 41525185 - 41525267
Alignment:
Q  46 ccggttcgacccgggttgaacctttaaaccttgaacccctatcttgaccggtttaatgtccagtccagttttaattaccttga 128  Q
    ||||||||| || |||||||||||| || || ||||||||||||  ||||||||||||||| |||| ||||  ||||||||||    
T  41525185 ccggttcgatcccggttgaacctttgaagctcgaacccctatctataccggtttaatgtccggtccggtttcgattaccttga 41525267  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 42424128 - 42424208
Alignment:
Q  47 cggttcgacccgggttgaacctttaaaccttgaacccctatcttgaccggtttaatgtccagtccagttttaattaccttg 127  Q
    ||||||||||| |||||||||||||||||| |||||| |  ||| |||||||| |||| | |||| ||| | |||||||||    
T  42424128 cggttcgaccccggttgaacctttaaacctcgaacccatgcctttaccggtttgatgttcggtccggttctgattaccttg 42424208  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 3895600 - 3895562
Alignment:
Q  45 accggttcgacccgggttgaacctttaaaccttgaaccc 83  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  3895600 accggttcgacctcggttgaacctttaaaccttgaaccc 3895562  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 174995 - 175075
Alignment:
Q  48 ggttcgacccgggttgaacctttaaaccttgaacccctatcttgaccggtttaatgtccagtccagttttaattaccttga 128  Q
    |||||||||| ||| ||||||| ||||| |||||||  | ||  |||||||  |||||| |||| ||||||||||||||||    
T  174995 ggttcgaccccggtcgaaccttcaaaccctgaacccaaacctacaccggttcgatgtccggtccggttttaattaccttga 175075  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 37395866 - 37395740
Alignment:
Q  1 ataaaaactaatataaatgaacattaaaatgatataaaagtatcaccggttcgacccgggttgaacctttaaaccttgaacccctatcttgaccggttta 100  Q
    ||||||| ||||| || |||| || ||||||||||||||||||||||||| ||||||  ||||||||||| |||| ||||||| ||||| ||||||||||    
T  37395866 ataaaaagtaatacaattgaatataaaaatgatataaaagtatcaccggtccgaccccagttgaacctttgaaccctgaacccatatctagaccggttta 37395767  T
Q  101 atgtccagtccagttttaattaccttg 127  Q
    |  ||| |||| ||||| |||||||||    
T  37395766 aactccggtccggttttgattaccttg 37395740  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 11612099 - 11612019
Alignment:
Q  48 ggttcgacccgggttgaacctttaaaccttgaacccctatcttgaccggtttaatgtccagtccagttttaattaccttga 128  Q
    |||||||||| |||||||||||||||||| |||||| |  ||| |||||||| |||||| |||| ||| | ||||||||||    
T  11612099 ggttcgaccccggttgaacctttaaacctcgaacccttgcctttaccggtttgatgtccggtccggttctgattaccttga 11612019  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 13414286 - 13414162
Alignment:
Q  1 ataaaaactaatataaatgaacattaaaatgatataaaagtatcaccggttcgacccgggttgaacctttaaaccttgaacccctatcttgaccggttta 100  Q
    ||||||| ||||| || |||| || |||||||||||||||||||||| || |||||| |||||||||||| |||| ||||||| ||| | ||||||||||    
T  13414286 ataaaaagtaatacaattgaatataaaaatgatataaaagtatcaccagtccgaccccggttgaacctttgaaccctgaacccatatttagaccggttta 13414187  T
Q  101 atgtccagtccagttttaattacct 125  Q
    |  ||| |||| ||||| |||||||    
T  13414186 aactccggtccggttttgattacct 13414162  T

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Target: scaffold0494 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 701 - 583
Alignment:
Q  9 taatataaatgaacattaaaatgatataaaagtatcaccggttcgacccgggttgaacctttaaaccttgaacccctatcttgaccggtttaatgtccag 108  Q
    ||||| || |||| || |||||||||||||||||||||  || |||||| |||||||||||| |||| ||||||| |||||  ||||||||||  ||| |    
T  701 taatacaattgaatataaaaatgatataaaagtatcactagtccgaccccggttgaacctttgaaccctgaacccatatctaaaccggtttaaactccgg 602  T
Q  109 tccagttttaattaccttg 127  Q
    ||| ||||| |||||||||    
T  601 tccggttttgattaccttg 583  T

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Target: scaffold0006 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 280822 - 280698
Alignment:
Q  1 ataaaaactaatataaatgaacattaaaatgatataaaagtatcaccggttcgacccgggttgaacctttaaaccttgaacccctatcttgaccggttta 100  Q
    ||||||| ||||| ||  ||| || |||||||||||||||||||||| || |||||| |||||||||||| ||||  |||||  ||| | ||||||||||    
T  280822 ataaaaagtaatacaatcgaatataaaaatgatataaaagtatcaccagtccgaccctggttgaacctttgaacccggaacctatatttagaccggttta 280723  T
Q  101 atgtccagtccagttttaattacct 125  Q
    |  ||| |||| ||||| |||||||    
T  280722 aactccggtccggttttgattacct 280698  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 6126540 - 6126457
Alignment:
Q  46 ccggttcgacccgggttgaacctttaaaccttgaacccctatcttgaccggtttaatgtccagtccagttttaattaccttgaa 129  Q
    |||||||||||| ||||||||||||||||||  ||| | || ||| ||||||||||||||| |||| ||| | |||||||||||    
T  6126540 ccggttcgaccccggttgaacctttaaacctcaaacacatacctttaccggtttaatgtccggtccggttctgattaccttgaa 6126457  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 14904655 - 14904736
Alignment:
Q  46 ccggttcgacccgggttgaacctttaaaccttgaacccctatcttgaccggtttaatgtccagtccagttttaattaccttg 127  Q
    |||||||||||| |||||||||||| |||| | ||||| |||||  |||||||||||| || ||||  ||||||||||||||    
T  14904655 ccggttcgaccccggttgaacctttgaaccctaaacccttatctacaccggtttaatgaccggtccgattttaattaccttg 14904736  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 26603550 - 26603623
Alignment:
Q  54 acccgggttgaacctttaaaccttgaacccctatcttgaccggtttaatgtccagtccagttttaattaccttg 127  Q
    |||| ||||| ||| ||||||||||||||| || ||  ||||||| ||||||| |||| |||||||||||||||    
T  26603550 accccggttggacccttaaaccttgaacccatacctacaccggttcaatgtccggtccggttttaattaccttg 26603623  T

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Target: scaffold0062 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 69586 - 69660
Alignment:
Q  54 acccgggttgaacctttaaaccttgaacccctatcttgaccggtttaatgtccagtccagttttaattaccttga 128  Q
    |||| ||||||||||  ||||||| ||||| | |||  ||||||||||||||| |||| ||||| ||||||||||    
T  69586 accccggttgaacctcaaaaccttaaacccatgtctccaccggtttaatgtccggtccggttttgattaccttga 69660  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 15721029 - 15721103
Alignment:
Q  54 acccgggttgaacctttaaaccttgaacccctatcttgaccggtttaatgtccagtccagttttaattaccttga 128  Q
    |||| ||||||||||  ||||||| ||||| | |||  ||||||||||||||| |||| ||||| ||||||||||    
T  15721029 accccggttgaacctcaaaaccttaaacccatgtctccaccggtttaatgtccggtccggttttgattaccttga 15721103  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 45032455 - 45032489
Alignment:
Q  92 accggtttaatgtccagtccagttttaattacctt 126  Q
    ||||||| |||||||||||||||||||||||||||    
T  45032455 accggttcaatgtccagtccagttttaattacctt 45032489  T

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