View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14607_low_24 (Length: 297)
Name: NF14607_low_24
Description: NF14607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14607_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 52317844 - 52317988
Alignment:
| Q |
13 |
tcatcaagttcactgccataggtgtttatttggaagatatagcagtggcttcactagctgccaaatggaagggtaaaacctctcaagagttactagagac |
112 |
Q |
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| T |
52317844 |
tcatcaagttcactgccataggtgtttatttggaagatatagcagtggcttcactagctgccaaatggaagggtaaaacctctcaagagttactagatac |
52317943 |
T |
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| Q |
113 |
ccttgacttttacagagacatcatctcaggtatgttatacatcag |
157 |
Q |
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| T |
52317944 |
ccttgacttttacagagacatcatctcaggtatgttatacatcag |
52317988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 52318089 - 52318164
Alignment:
| Q |
204 |
taaattgataatgttttaggtccctttgaaaagttaattagagggtcaaagattagggaattgagtggtcctgagt |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52318089 |
taaattgataatgttttaggtccctttgaaaagttaattagagggtcaaagattagggaattgagtggtcctgagt |
52318164 |
T |
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