View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14607_low_27 (Length: 269)
Name: NF14607_low_27
Description: NF14607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14607_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 50241275 - 50241527
Alignment:
| Q |
1 |
tccacaaaatccatgatgattatatagnnnnnnncaactgttttccatttatatgaaacatagagtatttannnnnnnnncagaaaaataatggcagcca |
100 |
Q |
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| T |
50241275 |
tccacaaaatccatgttgattatatagtttttttcaactgatttccatttatatgtaacatagagtatttatttttttt-cagaaaaataatggcagcca |
50241373 |
T |
|
| Q |
101 |
atggggagaagcatgagataaaatgtgcaattgatcatatcatagatgctgagaaaaaaggtgaaataagtgaagataatgtgacttacatagtagagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50241374 |
atggggagaagcatgagataaaatgtgcaattgatcatatcatagatgctgagaaaaaaggtgaaataagtgaagataatgtgacttacatagtagagaa |
50241473 |
T |
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| Q |
201 |
cattaatgttgctgcaatagagacaacactatggtccatggaatgggcaatagc |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50241474 |
cattaatgttgctgcaatagagacaacactatggtccatggaatgggcaatagc |
50241527 |
T |
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