View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14607_low_3 (Length: 510)

Name: NF14607_low_3
Description: NF14607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14607_low_3
NF14607_low_3
[»] chr4 (7 HSPs)
chr4 (1-505)||(38237491-38237998)
chr4 (2-80)||(38214001-38214079)
chr4 (2-80)||(38226380-38226458)
chr4 (2-80)||(38253247-38253325)
chr4 (1-80)||(38242894-38242973)
chr4 (1-80)||(38220039-38220118)
chr4 (314-465)||(38213627-38213780)
[»] chr6 (2 HSPs)
chr6 (2-80)||(17454476-17454554)
chr6 (2-80)||(17433397-17433475)
[»] chr2 (4 HSPs)
chr2 (2-78)||(11473539-11473615)
chr2 (2-78)||(11485810-11485886)
chr2 (35-78)||(11479749-11479792)
chr2 (3-79)||(11463035-11463111)
[»] chr1 (1 HSPs)
chr1 (14-78)||(21547341-21547405)


Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Complemental strand, 38237998 - 38237491
Alignment:
Q  1 tcaaactggtggctatgtgatctatggtgctgctcatcaacattcaggcggaattggatcaactctatatggacaggtaacttaagtcattcttaaatgc 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38237998 tcaaactggtggctatatgatctatggtgctgctcatcaacattcaggcggaattggatcaactctatatggacaggtaacttaagtcattcttaaatgc 38237899  T
Q  101 ttggtgtcggctcaatgggaatattttgacattgtgacttcaagagacagagttcaaaccccctcga--acaattgtataactgatatatcattttctaa 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  38237898 ttggtgtcggctcaatgggaatattttgacattgtgacttcaagagacagagttcaaaccccctcgagaacaattgtataactgatatatcattttctaa 38237799  T
Q  199 taatgattcttcctctaaaaataaactataaattattaccnnnnnnnn-agtcttagcacgtgattgttttcaattgatagtaagaaatgtttagctaac 297  Q
    |||||||||||||||||||||||||||||||||||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38237798 taatgattcttcctctaaaaataaactataaattatcacctttttttttagtcttagcacgtgattgttttcaattgatagtaagaaatgtttagctaac 38237699  T
Q  298 aagaaaatagtgtgatttattggctattgaggaccgtcaatgtttctttttgttgagtttattaacacgggtatggttcaagggctatcttgtaaacttg 397  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38237698 aagaaaatagtttgatttattagctattgaggaccgtcaatgtttctttttgttgagtttattaacacgggtatggttcaagggctatcttgtaaacttg 38237599  T
Q  398 accttagtatttatacacgagttgtaatatgttaaactagacggtagacataattgaccgaacgccattatcgaatttcgtatgttctctttttgtgttt 497  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38237598 accttagtatttatacacgagttgtaatatgttaaactaaacggtagacataattgaccgaacgccattatcgaatttcgtatgttctctttttgtgttt 38237499  T
Q  498 ttcatatc 505  Q
    ||||||||    
T  38237498 ttcatatc 38237491  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 38214079 - 38214001
Alignment:
Q  2 caaactggtggctatgtgatctatggtgctgctcatcaacattcaggcggaattggatcaactctatatggacaggtaa 80  Q
    |||||||||||||||||  |||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38214079 caaactggtggctatgttgtctatgctgttgctcatcagcattcaggcggaattggatcaactctatatggacaggtaa 38214001  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 38226458 - 38226380
Alignment:
Q  2 caaactggtggctatgtgatctatggtgctgctcatcaacattcaggcggaattggatcaactctatatggacaggtaa 80  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||| || |||||||    
T  38226458 caaactggtggctatgtgatctatggtgttgctcatcagcattcaggtggaattggatcaactctatacgggcaggtaa 38226380  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 38253325 - 38253247
Alignment:
Q  2 caaactggtggctatgtgatctatggtgctgctcatcaacattcaggcggaattggatcaactctatatggacaggtaa 80  Q
    ||||| |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| |||| |||||||||||    
T  38253325 caaaccggtggctatgtgatctatggtgttgctcatcagcattcaggtggaattggatcaaccctatttggacaggtaa 38253247  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 38242973 - 38242894
Alignment:
Q  1 tcaaactggtggctatgtgatctatggtgctgctcatcaacattcaggcggaattggatcaactctatatggacaggtaa 80  Q
    |||||||||||| |||||||||||||||| ||| ||||| |||||||| ||||||||||| || ||||||||||||||||    
T  38242973 tcaaactggtggatatgtgatctatggtgttgcacatcagcattcaggtggaattggatccaccctatatggacaggtaa 38242894  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 38220118 - 38220039
Alignment:
Q  1 tcaaactggtggctatgtgatctatggtgctgctcatcaacattcaggcggaattggatcaactctatatggacaggtaa 80  Q
    |||||||||||| |||||||||||||||| ||| ||||||||||| || ||||| ||||| || ||||||||||||||||    
T  38220118 tcaaactggtggttatgtgatctatggtgttgcacatcaacattcgggtggaatcggatccaccctatatggacaggtaa 38220039  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 465
Target Start/End: Complemental strand, 38213780 - 38213627
Alignment:
Q  314 ttattggctattgaggaccgtcaatgtttctttttgttgagtttattaacacgggtat--ggttcaagggctatcttgtaaacttgaccttagtatttat 411  Q
    |||||||| | |||||||  || |||||  ||||||||||||| ||| ||||||||||  |||||| |||  ||||| | |||   ||  ||| |||||     
T  38213780 ttattggcaactgaggactatctatgttcttttttgttgagttgattgacacgggtatatggttcaggggtaatcttatcaaccaaactgtagcatttaa 38213681  T
Q  412 acacgagttgtaatatgttaaactagacggtagacataattgaccgaacgccat 465  Q
    |||  ||||||||||| ||||||||||| ||||||| ||||| |||||||||||    
T  38213680 acagaagttgtaatatattaaactagacagtagacacaattggccgaacgccat 38213627  T

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Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 17454554 - 17454476
Alignment:
Q  2 caaactggtggctatgtgatctatggtgctgctcatcaacattcaggcggaattggatcaactctatatggacaggtaa 80  Q
    ||||||||||||||||||||||||| || |||||||||||||||||| ||| ||||||||||| |||||||||||||||    
T  17454554 caaactggtggctatgtgatctatgctgttgctcatcaacattcagggggagttggatcaactttatatggacaggtaa 17454476  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 17433475 - 17433397
Alignment:
Q  2 caaactggtggctatgtgatctatggtgctgctcatcaacattcaggcggaattggatcaactctatatggacaggtaa 80  Q
    ||||||||||| ||||||||||||| || |||||||||||||||||| |||| ||||||||||||||| ||||||||||    
T  17433475 caaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatcaactctatacggacaggtaa 17433397  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 11473539 - 11473615
Alignment:
Q  2 caaactggtggctatgtgatctatggtgctgctcatcaacattcaggcggaattggatcaactctatatggacaggt 78  Q
    |||| |||||| ||| | |||||||| | || ||||||||||||||| | |||||||||||||||||||||| ||||    
T  11473539 caaaatggtggttatctcatctatggagttggtcatcaacattcaggtgcaattggatcaactctatatggaaaggt 11473615  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 11485810 - 11485886
Alignment:
Q  2 caaactggtggctatgtgatctatggtgctgctcatcaacattcaggcggaattggatcaactctatatggacaggt 78  Q
    |||| |||||| ||||| |||||||| | || |||||| |||||||| | |||||||||||||||||||||| ||||    
T  11485810 caaaatggtggttatgtcatctatggagttggtcatcagcattcaggtgcaattggatcaactctatatggaaaggt 11485886  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 11479749 - 11479792
Alignment:
Q  35 catcaacattcaggcggaattggatcaactctatatggacaggt 78  Q
    ||||| |||||||| | |||||||||||||||||||||||||||    
T  11479749 catcagcattcaggtgcaattggatcaactctatatggacaggt 11479792  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 11463035 - 11463111
Alignment:
Q  3 aaactggtggctatgtgatctatggtgctgctcatcaacattcaggcggaattggatcaactctatatggacaggta 79  Q
    |||||||||| ||| | |||||  |||||| ||||||||||  ||| |  ||| |||||||||||||||||||||||    
T  11463035 aaactggtggttatataatctacagtgctggtcatcaacatgtaggtgcgattagatcaactctatatggacaggta 11463111  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 21547341 - 21547405
Alignment:
Q  14 tatgtgatctatggtgctgctcatcaacattcaggcggaattggatcaactctatatggacaggt 78  Q
    ||||| |||||||| | || ||||| |||  |||| | |||||||||||||||||||||||||||    
T  21547341 tatgtcatctatggagttggtcatctacacacaggtgcaattggatcaactctatatggacaggt 21547405  T

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