View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14607_low_36 (Length: 208)
Name: NF14607_low_36
Description: NF14607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14607_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 5e-98; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 50912601 - 50912417
Alignment:
| Q |
12 |
atgaagtgggacatatatttaattgctctctgaagtgttaagcgataattcaatctttgagaaatacctctagacaatattatgtgatctcttgtgaacc |
111 |
Q |
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| T |
50912601 |
atgaagtgggacatatatttaattgctctctgaagtgttaagcgataattcaatctttgagaaatacctctagacaatatcatgtgatctcttgtgaacc |
50912502 |
T |
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| Q |
112 |
ttagcttgattgtctccaactatactcttcaacaactaagtcaagaaaaataaatatgcacagttcataaataatgtgttaggtg |
196 |
Q |
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| T |
50912501 |
ttagcttgattgtctccaactatactcttcaacaactaagtcaagaaaaataaatatgcacagttcataaataatgtgttaggtg |
50912417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 38029600 - 38029425
Alignment:
| Q |
17 |
gtgggacatatatttaattgctctctgaagtgttaagcgataattcaatctttgagaaatacctctagacaatattatgtgatctcttgtgaaccttagc |
116 |
Q |
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| T |
38029600 |
gtgggacatatatttaattattgtctcaagtcttaagcaatcattcaatctttgaaaaagacctcttgagagtatcatgtgatctcttgtgaaccatatc |
38029501 |
T |
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| Q |
117 |
ttg---attgtctccaa-ctatactcttcaacaactaagtcaagaaaaataaatatgcacagttcataaataatgtg |
189 |
Q |
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| T |
38029500 |
ttgtctattgtctccaacctggac-cttcaaaaactaaatcaagaacagtaaatatgcacagttgataaataatgtg |
38029425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 38025686 - 38025509
Alignment:
| Q |
21 |
gacatatatttaattgctctctgaagtgttaagcgataattcaatctttgagaaatacctctagacaatattatgtgatctcttgtgaacctta----gc |
116 |
Q |
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| T |
38025686 |
gacatatatttaattattgtctcaagtcttgagcgatcattcaatctttgagaaagacctcttgacagtatcatggaatctcttgtgaaccatagtctgc |
38025587 |
T |
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| Q |
117 |
ttg---attgtctccaactatactcttcaacaactaagtcaagaaaaataaatatgcacagttcataaataatgtgtt |
191 |
Q |
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| T |
38025586 |
ttgtctattgtctccaacctggcccttcaaaaactaaatcaagaacagtaaatatgcacagttgataaataatgtgtt |
38025509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 191
Target Start/End: Complemental strand, 38034556 - 38034420
Alignment:
| Q |
63 |
aatctttgagaaatacctctagacaatattatgtgatctcttg-tgaaccttag----cttg---attgtctccaactatactcttcaacaactaagtca |
154 |
Q |
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| T |
38034556 |
aatctttgagaaagacctcttgagaatatcatgtgatctcttggtgaaccatagtctgcttgtctattgtctccaacctggcccttcaaaaactaaatca |
38034457 |
T |
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| Q |
155 |
agaaaaataaatatgcacagttcataaataatgtgtt |
191 |
Q |
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| T |
38034456 |
agaacagtaaatatgcacaattgataaataatgtgtt |
38034420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 55084144 - 55084211
Alignment:
| Q |
49 |
ttaagcgataattcaatctttgagaaatacctctagacaatattatgtgatctcttgtgaaccttagc |
116 |
Q |
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| T |
55084144 |
ttaagcaatcattcaatcttaaagaaagacctctagacagtttcatgtgatctcttgtgaaccatagc |
55084211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 38037612 - 38037525
Alignment:
| Q |
22 |
acatatatttaattgctctctgaagtgttaagcgataattcaatctttgagaaatacctctagacaatattatgtgatctcttgtgaac |
110 |
Q |
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| T |
38037612 |
acatacatttaattactctctcaagt-tcaagcaatcattcaatctttgagaaagacctcttgagagcatcatgtgatctctggtgaac |
38037525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 21605591 - 21605416
Alignment:
| Q |
17 |
gtgggacatatatttaattgctctctgaagtgttaagcgataattcaatctttgagaaatacctctagacaatattatgtgatctcttgtgaaccttagc |
116 |
Q |
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| T |
21605591 |
gtgggacatatatttaattattgtctcaagtcttaagcaatcattgaatctttgagaaagacctcttgagagtatcatgtgatctcttgtgaaccatagc |
21605492 |
T |
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| Q |
117 |
ttg---attgtctccaactatactcttcaacaactaagtcaagaaaaataaatatgcacagttcataaataatgtg |
189 |
Q |
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| T |
21605491 |
ttgtctattgtctccaacctggcccttcaaaaactaaatcaagaacagcaaatatgcacagttgataaataatgtg |
21605416 |
T |
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