View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14607_low_5 (Length: 471)
Name: NF14607_low_5
Description: NF14607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14607_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 20 - 453
Target Start/End: Original strand, 35481047 - 35481470
Alignment:
| Q |
20 |
aaacaaagatgactaaactgaacagatagatgtttcaactttcaatgcaataattggctatattattcacctttaaccatgtaaagataacatacaagct |
119 |
Q |
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| T |
35481047 |
aaacaaagatgactaaactgaacagatagatgtttc-------aatgcaataattggctatattattcacctttaaccatgtaaagataacgtacaagct |
35481139 |
T |
|
| Q |
120 |
atagagaaaacaaaaatgatcaagtccttctattaagtaggcaaagcaaaagaatattgcaactaaacccaaattaataaagagccatattccgcaggac |
219 |
Q |
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| T |
35481140 |
atagagaaaacaaaaatgatcaagtccttctattaagtaggcaaagcaaaagaatattgcaactaaacccaaattaataaagagccatattccgcaggac |
35481239 |
T |
|
| Q |
220 |
ccnnnnnnncaaaggtaaggaagaaagggaaaagagattgaaactcacttgactacaattcctaatccaatcctttaacccaatcttcatttcaatccca |
319 |
Q |
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| T |
35481240 |
ccaaaaaaacaaaggtaaggaagaaagggaaaagagattgaaactcacttgactacaattcctaatccaatcctttaaccc---cttcatttcaatccca |
35481336 |
T |
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| Q |
320 |
atcttcttcactcaacatatcaccatcattttcagtaggtggcctaacaacaataactacattccctaaacactcattaacccccatttccttcaaaatc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35481337 |
atcttcttcactcaacatatcaccatcattttcagtaggtggtctaacaacaataactacattccctaaacactcattaacccccatttccttcaaaatc |
35481436 |
T |
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| Q |
420 |
gaacccctttgaacctttaaaccaacatcattac |
453 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
35481437 |
gaacccctttgaacctttaaaccaacatcattac |
35481470 |
T |
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