View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14608_high_12 (Length: 312)
Name: NF14608_high_12
Description: NF14608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14608_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 7527555 - 7527853
Alignment:
| Q |
1 |
acaagttacaaaggcatctagtcttttagggatatctaaattgactatctaaaaacaaatttaaagaacaaaatgattgtctacccaaataaaagaacac |
100 |
Q |
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| T |
7527555 |
acaagttacaaaggcatctagtcttttagggatatctaaattgactatctaaaaacaaatttaaagaataaaatgattgtctacccaaataaaagaacac |
7527654 |
T |
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| Q |
101 |
taatacaatgttaaaaatcaggtttatttattttatctgcagagtaaaagaacccacgttgttgtaaggaaaaaagtttaatgcatttcattagatatag |
200 |
Q |
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| T |
7527655 |
taatacaatgttaaaaatcagctttctttattttatctgcaaaataaaagaacccacgttgttgtaaggaaaaaagtttaatgcatttcattatatatag |
7527754 |
T |
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| Q |
201 |
gttcaatgatacatgtcggtacatcaacaaaagtatagagacggattaaaaatatgatctatttaactaatgtttgaactatctcattcgttgtctctg |
299 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |||| ||||||||||| |||||||| |
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| T |
7527755 |
gttcaatgatacatatcggtacatcaacaaaagtatggagatggattaaaaatatgatctatttagctaatgtatgaattatctcattcgctgtctctg |
7527853 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 21822396 - 21822327
Alignment:
| Q |
165 |
taaggaaaaaagtttaatgcatttcattagatataggttcaatgatacatgtcggtacatcaacaaaagt |
234 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||| ||||| | ||||||||| | |||||| |
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| T |
21822396 |
taaggaaaaaagtttatagcatttcattagatattagttcaataatacacgacggtacatcgataaaagt |
21822327 |
T |
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