View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14608_high_4 (Length: 435)
Name: NF14608_high_4
Description: NF14608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14608_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 8269970 - 8270397
Alignment:
| Q |
1 |
attaaactctactatgtatagcagcaattagagttatatataactccacttgttaatatacaaagagccaaatctacatttctatgttactcgtggattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
8269970 |
attaaactctactatgtatagcagcaattagagttatatataattccacttgttaatatacaaagagccaaatctacatttctatgttattcatggattt |
8270069 |
T |
|
| Q |
101 |
ttctatgaatttaatttacactatccttctccacttgatattgtttttagttgtttgctttgaaacaaaggctatagtcaaacttcaaccaaatgtttca |
200 |
Q |
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| T |
8270070 |
ttctatgaatttaatttacactatccttctccacttgatattgtttttagttgtttgctttgaaacaaaggctatagtcaaacttcaaccaaatgtttca |
8270169 |
T |
|
| Q |
201 |
attccagcagtgtttgtgtttggagattcaattacggatacaggaaataacaactttnnnnnnncaatagctcgatgcgattttgcaccatatggaaaag |
300 |
Q |
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| T |
8270170 |
attccagcagtgtttgtgtttggagattcaattacggatacaggaaataacaactttaaaaaaacaatagctcgatgcgattttgcaccatatggaaaag |
8270269 |
T |
|
| Q |
301 |
attttccaggagggattgcaacaggtcgatttagcaacggaaaggttccatcagaccttataggtatacatattctcatctcaannnnnnnggcaacaca |
400 |
Q |
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| T |
8270270 |
attttccaggagggattgcaacaggtcgatttagcaacggaaaggttccatcagaccttataggtatacatattctcatctcaatttttttggcaacaca |
8270369 |
T |
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| Q |
401 |
ttaggattttaaaaagatagtataatct |
428 |
Q |
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| T |
8270370 |
ttaggattttaaagagatagtataatct |
8270397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 163 - 366
Target Start/End: Original strand, 8230981 - 8231187
Alignment:
| Q |
163 |
aaacaaaggctatagtcaaacttcaaccaaatgtttcaattccagcagtgtttgtgtttggagattcaattacggatacagg---aaataacaactttnn |
259 |
Q |
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| T |
8230981 |
aaacaaagggtatagtccaacttccaccaaatgtttcagttccagcagtgttggtgtttggagattctatcgtggatacaggtaacaataacaacaattt |
8231080 |
T |
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| Q |
260 |
nnnnncaatagctcgatgcgattttgcaccatatggaaaagattttccaggagggattgcaacaggtcgatttagcaacggaaaggttccatcagacctt |
359 |
Q |
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| T |
8231081 |
gagaacaacagctcgttgcaattttccaccttatgggaaagattttaaaggaggaattccaaccggaagatttagcaatggaaaagttccctcagacttc |
8231180 |
T |
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| Q |
360 |
ataggta |
366 |
Q |
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| T |
8231181 |
ataggta |
8231187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 366
Target Start/End: Original strand, 8252684 - 8252762
Alignment:
| Q |
288 |
ccatatggaaaagattttccaggagggattgcaacaggtcgatttagcaacggaaaggttccatcagaccttataggta |
366 |
Q |
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| T |
8252684 |
ccatatggaaaagattttcaaggaggaattccaacaggaagatttagcaatggaaaggttccagcagatcttataggta |
8252762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 352
Target Start/End: Original strand, 8242621 - 8242772
Alignment:
| Q |
201 |
attccagcagtgtttgtgtttggagattcaattacggatacaggaaataacaactttnnnnnnncaatagctcgatgcgattttgcaccatatggaaaag |
300 |
Q |
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| T |
8242621 |
attccagcagtgtttgtgtttggagattcaatcatggatactggaaataacaacaacatgacaacaccatctcggtgcaattaccctccatatgggaaag |
8242720 |
T |
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| Q |
301 |
attttccaggagggattgcaacaggtcgatttagcaacggaaaggttccatc |
352 |
Q |
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| T |
8242721 |
attttaaaggaggaattccaacaggaagatttagcaacggaaaggttccatc |
8242772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 254
Target Start/End: Original strand, 8252559 - 8252650
Alignment:
| Q |
163 |
aaacaaaggctatagtcaaacttcaaccaaatgtttcaattccagcagtgtttgtgtttggagattcaattacggatacaggaaataacaac |
254 |
Q |
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| T |
8252559 |
aaacaaaagctattttgaaactgccaccaaatgcttcgtttccagcagtgtttgtatttggagattcaatcatggatactggaaataacaac |
8252650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 53274196 - 53274254
Alignment:
| Q |
183 |
cttcaaccaaatgtttcaattccagcagtgtttgtgtttggagattcaattacggatac |
241 |
Q |
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|||| ||||||||||||| |||||||||| |||||||||||||||||||| | |||||| |
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| T |
53274196 |
cttccaccaaatgtttcatttccagcagtatttgtgtttggagattcaatcatggatac |
53274254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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