View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14608_high_6 (Length: 359)
Name: NF14608_high_6
Description: NF14608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14608_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 29737057 - 29736705
Alignment:
| Q |
1 |
atctagtcttaaatcctagtaatgattgatgtcacattaagtactcctatattatattgagtnnnnnnngtttaattattgactgttacctttagcaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29737057 |
atctagtcttaaatcctagtaatgattgatgtcacattaagtactcctatattatattgagtaaaaaaagtttaattattgactgttacctttagcaaca |
29736958 |
T |
|
| Q |
101 |
gcattgactatctttttacggaaacattaaggaagaagtggaatnnnnnnnnnnnnnnnnnnnnnnntcatttcgtcatttagcactagcttctcattca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29736957 |
tcattgactatctttttacggaaacattaaggaagaagtggaataaaaaataaaaccgtcaaaaaaaccatttcgtcatttagcactagcttctcattca |
29736858 |
T |
|
| Q |
201 |
ttcattcatttcattattcggtgacacaccttatctctctctct--gttctattcttctttaacttttcatttcacacaaaaagctaaatcaatacaacc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29736857 |
ttcattcatttcattattcggtgacacaccttatctctctctctctgttctattcttctttaacttttcatttcacacaaaaagctaaatcaatacaacc |
29736758 |
T |
|
| Q |
299 |
accactcactcttcccatctaaatcaaatcaaccttacttttctattcatctc |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29736757 |
accactcactcttcccatctaaatcaaatcaaccttacttttctattcatctc |
29736705 |
T |
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