View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14608_high_7 (Length: 351)
Name: NF14608_high_7
Description: NF14608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14608_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 39299679 - 39299562
Alignment:
| Q |
12 |
atgaacagaggaatgggaacaggacaagttgtggccgagaaaggaagaaaaacagaggatttaggaacaagaggtgaaggaaaagtacctggtgctggaa |
111 |
Q |
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| T |
39299679 |
atgaacagaggaatgggaacaggacaagttgtggcagagaaaggaagaaaaacagaggatttaggaacaagaggtgaaggaaaagtacctggtgctggaa |
39299580 |
T |
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| Q |
112 |
atgtaggttcaatgtggg |
129 |
Q |
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| T |
39299579 |
atgtaggttcgatgtggg |
39299562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 220 - 327
Target Start/End: Complemental strand, 39299471 - 39299364
Alignment:
| Q |
220 |
ttggtggtgaaaatgaaggtgtaatcttgggaaagagtgtagctgagcaaagaggaagagcgggtgctggaaatgaaggtgcaatgttgggaaaaagtgg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39299471 |
ttggtggtgaaaatgaaggtgtaatcttgggaaagagtgttgctgagcaaagaggaagagcgggtgctggaaatgaaggtgcaatgttgggaaaaagtgc |
39299372 |
T |
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| Q |
320 |
tgctgaac |
327 |
Q |
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|||||||| |
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| T |
39299371 |
tgctgaac |
39299364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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