View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14609_high_1 (Length: 533)

Name: NF14609_high_1
Description: NF14609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14609_high_1
NF14609_high_1
[»] chr4 (9 HSPs)
chr4 (324-518)||(49158925-49159124)
chr4 (35-292)||(49159176-49159429)
chr4 (323-385)||(14043948-14044010)
chr4 (331-387)||(17115920-17115976)
chr4 (332-384)||(18862402-18862454)
chr4 (329-382)||(43148556-43148609)
chr4 (232-287)||(42451963-42452018)
chr4 (329-387)||(542284-542341)
chr4 (329-385)||(4787072-4787128)
[»] chr7 (8 HSPs)
chr7 (324-387)||(1295576-1295639)
chr7 (315-388)||(16984321-16984393)
chr7 (329-385)||(2847151-2847207)
chr7 (355-389)||(145674-145708)
chr7 (230-292)||(2847264-2847326)
chr7 (351-384)||(28065608-28065641)
chr7 (326-383)||(37586524-37586581)
chr7 (354-386)||(11827916-11827948)
[»] chr2 (7 HSPs)
chr2 (324-385)||(34608775-34608836)
chr2 (330-385)||(25770409-25770464)
chr2 (329-385)||(25780903-25780959)
chr2 (329-385)||(26170176-26170232)
chr2 (232-292)||(26227813-26227873)
chr2 (238-292)||(41101315-41101370)
chr2 (329-385)||(41101147-41101203)
[»] chr8 (6 HSPs)
chr8 (329-388)||(15892033-15892092)
chr8 (329-385)||(32158709-32158765)
chr8 (232-287)||(33609438-33609493)
chr8 (230-287)||(32158622-32158679)
chr8 (230-263)||(40520067-40520100)
chr8 (350-386)||(32035747-32035783)
[»] chr1 (4 HSPs)
chr1 (324-385)||(5270142-5270203)
chr1 (332-386)||(2093635-2093689)
chr1 (344-385)||(47542948-47542989)
chr1 (232-276)||(10884523-10884567)
[»] chr6 (6 HSPs)
chr6 (330-386)||(24359195-24359251)
chr6 (328-376)||(3442804-3442851)
chr6 (332-385)||(2038318-2038371)
chr6 (329-377)||(10378723-10378771)
chr6 (339-387)||(14469142-14469190)
chr6 (354-386)||(35018821-35018853)
[»] chr5 (2 HSPs)
chr5 (332-386)||(22858539-22858593)
chr5 (356-388)||(2598536-2598568)
[»] chr3 (1 HSPs)
chr3 (329-385)||(44893611-44893667)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 8e-90; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 324 - 518
Target Start/End: Complemental strand, 49159124 - 49158925
Alignment:
Q  324 agggatatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattctttgaacaatatttaaaggaaa-----ttgtgcagttt 418  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||    
T  49159124 aggggtatttttggaattttagtttggaatgagcaaaatgtgttgggtaaagagcagaattctttgaacaatatttaaaggaaaggaaattgtgcagttt 49159025  T
Q  419 tgtgtcattttcacaagtcagaaacttggtctccacttcaatttctcttcttcatcgctaccagttactgccaaggttccattttttctctattcatttt 518  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49159024 tctgtcattttcacaagtcagaaacttggtctccacttcaatttctcttcttcatcgctaccagttactgccaaggttccattttttctctattcatttt 49158925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 35 - 292
Target Start/End: Complemental strand, 49159429 - 49159176
Alignment:
Q  35 taaccattatataaatctcataaatccacatggataaa-acattattttttaaatggcaatgcctatttgaatatcatattcatccgataataaaatgag 133  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49159429 taaccattatataaatctcataaatccacatggataaggacattattttttaaatggcaatgcctatttgaatatcatattcatccaataataaaatgag 49159330  T
Q  134 tgttgaaagaaaatgtctgaacggacagaataatagacttttggtatttatgattttgggccaaacgggcttggatgataagatgaagatttgagcaaga 233  Q
     ||| ||||||| ||||     ||||  || ||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49159329 cgttaaaagaaagtgtc-----ggactaaacaatgggtctttggtatttatgattttgggccaaacgggcttggatgataagatgaagatttgagcaaga 49159235  T
Q  234 attctgctctttatccaacaaaaaatgctcattcttaactgaaataactataattcccc 292  Q
    ||||||||||||||||||||||||||||| ||||  ||||||||| |||||||||||||    
T  49159234 attctgctctttatccaacaaaaaatgctaattcccaactgaaatgactataattcccc 49159176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 385
Target Start/End: Complemental strand, 14044010 - 14043948
Alignment:
Q  323 tagggatatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 385  Q
    |||||| ||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  14044010 tagggacattttaggaatttcagttgggaatgagcaaaatgtgtttggtaaagagcagaattc 14043948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 331 - 387
Target Start/End: Original strand, 17115920 - 17115976
Alignment:
Q  331 tttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattctt 387  Q
    ||||| |||||||||||  |||||||||||||||||| |||||||||||||||||||    
T  17115920 ttttttgaatttcagttgagaatgagcaaaatgtgttaggtaaagagcagaattctt 17115976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 384
Target Start/End: Original strand, 18862402 - 18862454
Alignment:
Q  332 ttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaatt 384  Q
    ||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  18862402 ttttgaaatttcagttgggaatgagcaaaatgtgttaggttaagagcagaatt 18862454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 43148609 - 43148556
Alignment:
Q  329 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaa 382  Q
    |||||||  ||||| |||| |||||||||||||||| |||||||||||||||||    
T  43148609 tatttttaaaattttagttgggaatgagcaaaatgtattgggtaaagagcagaa 43148556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 42452018 - 42451963
Alignment:
Q  232 gaattctgctctttatccaacaaaaaatgctcattcttaactgaaataactataat 287  Q
    |||||||| |||||||||||  ||||||| ||||||| ||||||||| ||||||||    
T  42452018 gaattctgttctttatccaatcaaaaatgttcattctcaactgaaatgactataat 42451963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 387
Target Start/End: Complemental strand, 542341 - 542284
Alignment:
Q  329 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattctt 387  Q
    |||||||||||||||||||  ||| ||||||||| |||||||||| ||||| |||||||    
T  542341 tatttttggaatttcagttgagaa-gagcaaaatatgttgggtaatgagcaaaattctt 542284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 4787128 - 4787072
Alignment:
Q  329 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 385  Q
    |||||||| |||| || ||  ||||||||||||| |||| |||||||||||||||||    
T  4787128 tatttttgaaattgcacttgagaatgagcaaaatatgttcggtaaagagcagaattc 4787072  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 324 - 387
Target Start/End: Original strand, 1295576 - 1295639
Alignment:
Q  324 agggatatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattctt 387  Q
    |||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1295576 aggggtatttttgaaatttcagttaggaatgagcaaaatgtgttgggtaaagagcagaattctt 1295639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 16984393 - 16984321
Alignment:
Q  315 aactcagatagggatatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattcttt 388  Q
    |||||| | ||||||| ||||||||||| |||| |||||||||||||||||||||||  |||||||||||||||    
T  16984393 aactcacacagggataattttggaattttagttgggaatgagcaaaatgtgttgggt-tagagcagaattcttt 16984321  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 2847207 - 2847151
Alignment:
Q  329 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 385  Q
    ||||||| ||||||||||| |||||||||||||  |||| |||||||||||||||||    
T  2847207 tatttttagaatttcagttgggaatgagcaaaacatgttaggtaaagagcagaattc 2847151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 389
Target Start/End: Complemental strand, 145708 - 145674
Alignment:
Q  355 agcaaaatgtgttgggtaaagagcagaattctttg 389  Q
    ||||||| |||||||||||||||||||||||||||    
T  145708 agcaaaaagtgttgggtaaagagcagaattctttg 145674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 292
Target Start/End: Complemental strand, 2847326 - 2847264
Alignment:
Q  230 aagaattctgctctttatccaacaaaaaatgctcattcttaactgaaataactataattcccc 292  Q
    ||||||||||||||||| || |||||||||| | ||||  ||||||||| |||||||| ||||    
T  2847326 aagaattctgctctttaccctacaaaaaatgtttattcccaactgaaatgactataatgcccc 2847264  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 28065641 - 28065608
Alignment:
Q  351 aatgagcaaaatgtgttgggtaaagagcagaatt 384  Q
    |||||| |||||||||||||||||||||||||||    
T  28065641 aatgagtaaaatgtgttgggtaaagagcagaatt 28065608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 37586524 - 37586581
Alignment:
Q  326 ggatatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaat 383  Q
    |||||||||||||||||||||| |||  ||||||  | |||||| |||||||||||||    
T  37586524 ggatatttttggaatttcagttgggagcgagcaatttctgttggataaagagcagaat 37586581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 11827916 - 11827948
Alignment:
Q  354 gagcaaaatgtgttgggtaaagagcagaattct 386  Q
    |||||||| ||||||||||||||||||||||||    
T  11827916 gagcaaaaagtgttgggtaaagagcagaattct 11827948  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 34608775 - 34608836
Alignment:
Q  324 agggatatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 385  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||    
T  34608775 agggatatttttggaatttcagttgggaataagcaaaatgtgttgggtaaagagcaaaattc 34608836  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 385
Target Start/End: Original strand, 25770409 - 25770464
Alignment:
Q  330 atttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 385  Q
    |||||| |||||||||||   |||||||||||||||||||||||||||||||||||    
T  25770409 atttttagaatttcagttgaaaatgagcaaaatgtgttgggtaaagagcagaattc 25770464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 25780903 - 25780959
Alignment:
Q  329 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 385  Q
    |||||||| |||||||||| | |||||||||||||||||||||||| |||| |||||    
T  25780903 tatttttgaaatttcagttggaaatgagcaaaatgtgttgggtaaatagcacaattc 25780959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 26170232 - 26170176
Alignment:
Q  329 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 385  Q
    ||||||||||||||||||| ||   ||||||| ||||||| ||||||||||||||||    
T  26170232 tatttttggaatttcagttgggcgcgagcaaattgtgttgagtaaagagcagaattc 26170176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 26227873 - 26227813
Alignment:
Q  232 gaattctgctctttatccaacaaaaaatgctcattcttaactgaaataactataattcccc 292  Q
    |||| |||||||||| ||||||||||||||||||||  ||||||||  |||||||| ||||    
T  26227873 gaatcctgctctttacccaacaaaaaatgctcattccgaactgaaaatactataatacccc 26227813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 41101370 - 41101315
Alignment:
Q  238 tgctctttatccaacaaaaaatgctcatt-cttaactgaaataactataattcccc 292  Q
    ||||||||||||||||||||||||||||| |  ||||||||| |||||||| ||||    
T  41101370 tgctctttatccaacaaaaaatgctcattccccaactgaaatgactataatgcccc 41101315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 41101203 - 41101147
Alignment:
Q  329 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 385  Q
    ||||||| |||||||| || | || ||||||||||||||||||||| |||| |||||    
T  41101203 tatttttagaatttcaattggaaacgagcaaaatgtgttgggtaaatagcataattc 41101147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 329 - 388
Target Start/End: Complemental strand, 15892092 - 15892033
Alignment:
Q  329 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattcttt 388  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||| || ||||||||    
T  15892092 tatttttggaatttcagttgggaatgagcataatgtgttgggtaaagaacataattcttt 15892033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 32158709 - 32158765
Alignment:
Q  329 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 385  Q
    ||||||||||||||| ||| | |||||||||||||||||||||||||||| ||||||    
T  32158709 tatttttggaatttcggttggcaatgagcaaaatgtgttgggtaaagagcggaattc 32158765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 33609493 - 33609438
Alignment:
Q  232 gaattctgctctttatccaacaaaaaatgctcattcttaactgaaataactataat 287  Q
    ||||| || |||||| ||||| ||||||||||||||| ||||||||| ||||||||    
T  33609493 gaattttggtctttacccaaccaaaaatgctcattctcaactgaaatgactataat 33609438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 32158622 - 32158679
Alignment:
Q  230 aagaattctgctctttatccaacaaaaaatgctcattcttaactgaaataactataat 287  Q
    ||||||| ||||||||| ||||| ||||||||||||||  |||| |||| ||||||||    
T  32158622 aagaattatgctctttacccaaccaaaaatgctcattcccaactaaaatgactataat 32158679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 40520067 - 40520100
Alignment:
Q  230 aagaattctgctctttatccaacaaaaaatgctc 263  Q
    |||||||||||||||||||||||||||| |||||    
T  40520067 aagaattctgctctttatccaacaaaaattgctc 40520100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 32035783 - 32035747
Alignment:
Q  350 gaatgagcaaaatgtgttgggtaaagagcagaattct 386  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  32035783 gaatgagcaaaatatgttggataaagagcagaattct 32035747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 5270142 - 5270203
Alignment:
Q  324 agggatatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 385  Q
    |||| ||||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||    
T  5270142 aggggtatttttggaatttcagttggaaatgaacaaaatgtgttgggtaaagagcaaaattc 5270203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 386
Target Start/End: Original strand, 2093635 - 2093689
Alignment:
Q  332 ttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattct 386  Q
    |||||||| ||||||| |||||||  ||| |||||||||||||||||||||||||    
T  2093635 ttttggaacttcagttgggaatgattaaattgtgttgggtaaagagcagaattct 2093689  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 47542989 - 47542948
Alignment:
Q  344 agtttggaatgagcaaaatgtgttgggtaaagagcagaattc 385  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  47542989 agttgggaatgagcaaaatgtgttggggaaagagcagaattc 47542948  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 10884567 - 10884523
Alignment:
Q  232 gaattctgctctttatccaacaaaaaatgctcattcttaactgaa 276  Q
    ||||||||||||||| |||| ||||| |||||||||| |||||||    
T  10884567 gaattctgctctttacccaaaaaaaattgctcattctcaactgaa 10884523  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 330 - 386
Target Start/End: Original strand, 24359195 - 24359251
Alignment:
Q  330 atttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattct 386  Q
    ||||||||||||||||||   |||||| |||||||||||||||||||||||||||||    
T  24359195 atttttggaatttcagttgaaaatgagaaaaatgtgttgggtaaagagcagaattct 24359251  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 3442804 - 3442851
Alignment:
Q  328 atatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaaga 376  Q
    |||||||| ||||||||||| ||||||||| ||||||||||||||||||    
T  3442804 atatttttagaatttcagtt-ggaatgagcgaaatgtgttgggtaaaga 3442851  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 2038371 - 2038318
Alignment:
Q  332 ttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 385  Q
    ||||||||||||||||  |||| || ||||| |||| |||||||||||||||||    
T  2038371 ttttggaatttcagttgagaattagtaaaatatgtttggtaaagagcagaattc 2038318  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 10378771 - 10378723
Alignment:
Q  329 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagag 377  Q
    |||||||| ||||||| ||  |||||||||||||||||||| |||||||    
T  10378771 tatttttgaaatttcaattgtgaatgagcaaaatgtgttggataaagag 10378723  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 387
Target Start/End: Complemental strand, 14469190 - 14469142
Alignment:
Q  339 atttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattctt 387  Q
    ||||||||| | |||||||||||  |||| |||||||||||||||||||    
T  14469190 atttcagttggaaatgagcaaaaactgttaggtaaagagcagaattctt 14469142  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 35018821 - 35018853
Alignment:
Q  354 gagcaaaatgtgttgggtaaagagcagaattct 386  Q
    |||||||||||||||||| ||||||||||||||    
T  35018821 gagcaaaatgtgttgggtgaagagcagaattct 35018853  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 386
Target Start/End: Original strand, 22858539 - 22858593
Alignment:
Q  332 ttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattct 386  Q
    |||||| ||||||||| ||||||| ||||| ||||||||||||||||| ||||||    
T  22858539 ttttgggatttcagttgggaatgaacaaaacgtgttgggtaaagagcataattct 22858593  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 388
Target Start/End: Complemental strand, 2598568 - 2598536
Alignment:
Q  356 gcaaaatgtgttgggtaaagagcagaattcttt 388  Q
    |||||||||||||||||||||||||||||||||    
T  2598568 gcaaaatgtgttgggtaaagagcagaattcttt 2598536  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 44893611 - 44893667
Alignment:
Q  329 tatttttggaatttcagtttggaatgagcaaaatgtgttgggtaaagagcagaattc 385  Q
    |||||||| |||||||||| |||||||||||||| | ||  ||||||||||||||||    
T  44893611 tatttttgaaatttcagttgggaatgagcaaaatatattatgtaaagagcagaattc 44893667  T

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