View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14609_high_10 (Length: 304)
Name: NF14609_high_10
Description: NF14609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14609_high_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 304
Target Start/End: Complemental strand, 55162217 - 55161924
Alignment:
| Q |
11 |
cagagagacaaaactataattagattcttctatatatcttttaatatataccttacctatgagacaccaaatt-----gtttttaatttgaagtgtgagt |
105 |
Q |
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| T |
55162217 |
cagagagacaaaactataattagattcttctatatatcttttaatatatacct-----atgagacaccaaattaaattgtttttaatttgaagtgtgagt |
55162123 |
T |
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| Q |
106 |
gctgaagtgaagattagcttggactgactcacagtgttgatgatatattgttggttgatcctccattggtgatgagtaaatggctgcagtgattgacttg |
205 |
Q |
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| T |
55162122 |
gctgaagtgaagattagcttggactgactcacagtgttgatgatatattgttggttgattctccattggtgctgagtaaatggctgcaatgattgacttg |
55162023 |
T |
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| Q |
206 |
ctatatctatatccacatcttttccatctgagttatgaaagaagatggtagatgaatttgaaggagaattgagaagaaatccacctttgagaaatgacc |
304 |
Q |
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| T |
55162022 |
ctatatctatatccacatcttttccatctgagttatgaaagaagatggtagatgaatttgaaggagaattgagaagaaatccacctttgagaaatgacc |
55161924 |
T |
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