View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14609_high_12 (Length: 302)
Name: NF14609_high_12
Description: NF14609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14609_high_12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 50275919 - 50275622
Alignment:
| Q |
9 |
agcataggtgcaaaggctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275919 |
agcataggtgcaaaggctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccg |
50275820 |
T |
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| Q |
109 |
aacttcccaaggtgattttgttcgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatatttag |
208 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275819 |
aacttctcaaggtgattttgtttgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatatttag |
50275720 |
T |
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| Q |
209 |
aatgaataagcggttacatcaagact----ttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactctta |
302 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275719 |
aatgaataagcgattacatcaagactttatttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactctta |
50275622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 50279943 - 50279646
Alignment:
| Q |
9 |
agcataggtgcaaaggctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279943 |
agcataggtgcaaaggctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccg |
50279844 |
T |
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| Q |
109 |
aacttcccaaggtgattttgttcgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatatttag |
208 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279843 |
aacttctcaaggtgattttgtttgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatatttag |
50279744 |
T |
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| Q |
209 |
aatgaataagcggttacatcaagact----ttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactctta |
302 |
Q |
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| T |
50279743 |
aatgaataagcgattacatcaagactttatttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactctta |
50279646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 14462564 - 14462668
Alignment:
| Q |
9 |
agcataggtgcaaaggctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14462564 |
agcataggtgcaaaggctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccg |
14462663 |
T |
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| Q |
109 |
aactt |
113 |
Q |
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||||| |
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| T |
14462664 |
aactt |
14462668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 22610169 - 22610283
Alignment:
| Q |
9 |
agcataggtgcaaaggctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccg |
108 |
Q |
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|||||||| |||||| |||||||||||||||| || | |||||||||||||||||| | |||||||| ||| || |||| ||||| ||| |||||||| | |
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| T |
22610169 |
agcataggggcaaagactgatgtatttcacatgctctatgggttgtggaagacaccagtagaaagattttttatttggcatggtgcatttcgttcatctg |
22610268 |
T |
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| Q |
109 |
aacttcccaaggtga |
123 |
Q |
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| T |
22610269 |
aaattctcaaggtga |
22610283 |
T |
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