View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14609_high_13 (Length: 300)
Name: NF14609_high_13
Description: NF14609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14609_high_13 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 4243892 - 4243612
Alignment:
| Q |
20 |
gtgagagcgatcatgtagagattaatcaaaactttcatccttttttgctttccggaacaaaagttgtcgatggatatgcaaaaatgctcgttacatcggt |
119 |
Q |
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| T |
4243892 |
gtgagagcgatcatgtagagattaatcaaaactttcatccttttttgctttccggaacaaaagttgtcgatggatatgcaaaaatgctcgttacatcggt |
4243793 |
T |
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| Q |
120 |
tggtatgaacacaacatggggacaaatgatgagttccataagcaatgacatcaacgaagaaaccccttcgcaaacaaggttgaataaacttacatcctca |
219 |
Q |
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| T |
4243792 |
tggtatgaacacaacatggggacaaatgatgagttccataagcaatgacatcaacgaagaaacccctttgcaaacaaggttgaataaacttacatcctca |
4243693 |
T |
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| Q |
220 |
atcggaaaggttggtttggctgtcgcatttttagtccttgttgttctgttgattcgatatttcaccgggaacacaaagact |
300 |
Q |
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| T |
4243692 |
atcggaaaggttggtttggctgtcgcatttttagtccttgttgttctgttgattcgatatttcaccgggaacacaaagact |
4243612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 6186948 - 6186668
Alignment:
| Q |
20 |
gtgagagcgatcatgtagagattaatcaaaactttcatccttttttgctttccggaacaaaagttgtcgatggatatgcaaaaatgctcgttacatcggt |
119 |
Q |
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||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6186948 |
gtgagagtgatcatgtagagataaatcaaaattttcatccttttttgctttccgggacaaaagttgtcgatggatatgcaaaaatgcttgttacatcggt |
6186849 |
T |
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| Q |
120 |
tggtatgaacacaacatggggacaaatgatgagttccataagcaatgacatcaacgaagaaaccccttcgcaaacaaggttgaataaacttacatcctca |
219 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| | || ||||| |||| |||||||||||||||||| || ||||| || |
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| T |
6186848 |
cggtatgaacacaacatggggacaaatgatgagttcgataagcaatgacatcgatgaggaaacacctttgcaaacaaggttgaataagctaacatcatcg |
6186749 |
T |
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| Q |
220 |
atcggaaaggttggtttggctgtcgcatttttagtccttgttgttctgttgattcgatatttcaccgggaacacaaagact |
300 |
Q |
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| T |
6186748 |
atcggaaaagttggtttggttgtcgcgtttttagtcctggttgttctcttggttcgatatttcaccgggaatacaaagact |
6186668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 152
Target Start/End: Complemental strand, 38358526 - 38358431
Alignment:
| Q |
57 |
tccttttttgctttccggaacaaaagttgtcgatggatatgcaaaaatgctcgttacatcggttggtatgaacacaacatggggacaaatgatgag |
152 |
Q |
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|||||||||| | ||||| |||||||||| ||||||||||| | ||||| || ||||| || || | |||||| ||||||||||||||||||| |
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| T |
38358526 |
tccttttttgttgtccggcgcaaaagttgtggatggatatgctcagatgcttgtaacatctgtgggcaaaaacacatcatggggacaaatgatgag |
38358431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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