View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14609_high_6 (Length: 330)
Name: NF14609_high_6
Description: NF14609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14609_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 7668887 - 7668750
Alignment:
| Q |
17 |
agaagaagaagatgacactaggtttgatcaatgctaatccaatagtccacgccaaaaaagaacgaatccctcgctcccaagaatctcactccgatcattt |
116 |
Q |
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| T |
7668887 |
agaagaagaagatgacactaggtttgatcaatgctaatccaatagtccacgccaaaaaagaacgaatccctcgctccgaagaatctcactccgatcattt |
7668788 |
T |
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| Q |
117 |
cgttgatcctctcgatatttatgatatcctttctttca |
154 |
Q |
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| T |
7668787 |
cgttgatcctctcgatatttatgatatcctttctttca |
7668750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 230 - 328
Target Start/End: Complemental strand, 7668673 - 7668575
Alignment:
| Q |
230 |
caaatttcgttagagatattagggatcctgaacatccttattctttggaacagcttaatgttctgtctgaagaatccatttctgttgatgacaaattgg |
328 |
Q |
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| T |
7668673 |
caaatttcgttagagatattagggatcctgaacatccttattctttggaacagcttaatgttctgtctgaagaatccatttctgttgatgacaaattgg |
7668575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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