View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14609_high_7 (Length: 324)

Name: NF14609_high_7
Description: NF14609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14609_high_7
NF14609_high_7
[»] chr5 (18 HSPs)
chr5 (114-268)||(40335843-40335997)
chr5 (119-231)||(40378347-40378459)
chr5 (11-88)||(40378582-40378664)
chr5 (269-322)||(40335571-40335624)
chr5 (148-210)||(12975326-12975387)
chr5 (119-207)||(34117569-34117654)
chr5 (121-201)||(2568608-2568689)
chr5 (121-201)||(14295457-14295537)
chr5 (145-200)||(36325986-36326041)
chr5 (170-212)||(30217082-30217124)
chr5 (131-176)||(7470592-7470636)
chr5 (119-211)||(18875310-18875402)
chr5 (155-212)||(18902781-18902837)
chr5 (121-252)||(9202733-9202867)
chr5 (119-191)||(18704085-18704156)
chr5 (145-201)||(18857439-18857494)
chr5 (132-212)||(26390818-26390897)
chr5 (157-259)||(41957430-41957534)
[»] chr6 (8 HSPs)
chr6 (121-212)||(33787773-33787864)
chr6 (124-212)||(24838771-24838859)
chr6 (121-212)||(24782010-24782101)
chr6 (119-252)||(6647338-6647471)
chr6 (121-191)||(4006665-4006735)
chr6 (129-212)||(281876-281959)
chr6 (133-212)||(10154184-10154263)
chr6 (121-188)||(29274281-29274348)
[»] chr4 (15 HSPs)
chr4 (120-212)||(18628571-18628663)
chr4 (119-212)||(30207599-30207691)
chr4 (129-201)||(2996532-2996604)
chr4 (121-232)||(17884019-17884131)
chr4 (119-212)||(49219088-49219181)
chr4 (157-268)||(23819076-23819189)
chr4 (121-164)||(34368828-34368872)
chr4 (121-212)||(52735073-52735164)
chr4 (129-201)||(10192243-10192315)
chr4 (121-209)||(54325068-54325156)
chr4 (163-212)||(56480341-56480390)
chr4 (157-209)||(1408327-1408379)
chr4 (132-191)||(3175913-3175972)
chr4 (121-232)||(43824235-43824346)
chr4 (129-208)||(49085948-49086027)
[»] chr1 (8 HSPs)
chr1 (119-191)||(49517019-49517091)
chr1 (121-212)||(7472263-7472353)
chr1 (145-200)||(25006074-25006128)
chr1 (135-193)||(6231863-6231921)
chr1 (163-268)||(35590863-35590969)
chr1 (133-201)||(4548684-4548752)
chr1 (157-221)||(4549561-4549625)
chr1 (119-206)||(7273973-7274060)
[»] chr7 (13 HSPs)
chr7 (121-212)||(30456478-30456569)
chr7 (157-230)||(6263373-6263446)
chr7 (123-221)||(28165044-28165142)
chr7 (130-212)||(38010674-38010756)
chr7 (157-207)||(18350740-18350790)
chr7 (121-198)||(27548214-27548291)
chr7 (145-191)||(44821935-44821980)
chr7 (129-201)||(1417223-1417295)
chr7 (121-177)||(35536058-35536114)
chr7 (129-212)||(22759145-22759228)
chr7 (121-212)||(27481322-27481413)
chr7 (119-170)||(39591537-39591588)
chr7 (121-200)||(47177587-47177666)
[»] chr8 (13 HSPs)
chr8 (157-212)||(9836882-9836937)
chr8 (157-212)||(11795079-11795134)
chr8 (163-212)||(8062322-8062371)
chr8 (122-206)||(8823427-8823511)
chr8 (130-189)||(4510988-4511047)
chr8 (145-212)||(6509331-6509397)
chr8 (170-259)||(11569436-11569527)
chr8 (157-212)||(28769367-28769422)
chr8 (119-188)||(12361141-12361210)
chr8 (140-212)||(8062495-8062566)
chr8 (133-212)||(31705047-31705127)
chr8 (129-212)||(34551079-34551162)
chr8 (163-207)||(41470344-41470388)
[»] chr2 (12 HSPs)
chr2 (119-209)||(10143121-10143211)
chr2 (157-221)||(35099618-35099682)
chr2 (130-200)||(11513858-11513928)
chr2 (157-200)||(18066115-18066158)
chr2 (157-200)||(18179280-18179323)
chr2 (130-212)||(22681213-22681295)
chr2 (170-212)||(11488277-11488319)
chr2 (157-191)||(15377752-15377786)
chr2 (121-212)||(656805-656896)
chr2 (156-200)||(16353847-16353891)
chr2 (129-212)||(18962066-18962149)
chr2 (157-221)||(43205296-43205360)
[»] chr3 (8 HSPs)
chr3 (145-268)||(37273107-37273234)
chr3 (163-244)||(39602204-39602287)
chr3 (129-210)||(1125796-1125878)
chr3 (134-211)||(2201092-2201169)
chr3 (129-190)||(23530234-23530296)
chr3 (162-212)||(24158531-24158581)
chr3 (121-208)||(24887315-24887402)
chr3 (157-201)||(52618990-52619034)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 114 - 268
Target Start/End: Complemental strand, 40335997 - 40335843
Alignment:
Q  114 cgtaggttatttctttaacaaaagataaaacaagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaatt 213  Q
    |||| ||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||    
T  40335997 cgtatgttatttctttgacaaaagataaaataagccaaattgtttttcatataagttataagctgctttcataagctatcttggaaagcttatggaaatt 40335898  T
Q  214 tgttgaaacaacttatgaaatgtcataagctctttccataaactctaccgaacag 268  Q
    || ||||||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  40335897 tgctgaaacaacttatgaaaagtcacaagctctttccataaactctaccaaacag 40335843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 119 - 231
Target Start/End: Complemental strand, 40378459 - 40378347
Alignment:
Q  119 gttatttctttaacaaaagataaaacaagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttg 218  Q
    ||||| |||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  40378459 gttatctctttaacgaaagataaaacaagccaaactgtatttcatataagttataagctgctatcataaactaacttggagagattatggaaatttgttg 40378360  T
Q  219 aaacaacttatga 231  Q
    |||||||||||||    
T  40378359 aaacaacttatga 40378347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 40378664 - 40378582
Alignment:
Q  11 caaaggaacaagatacaaacaaaagaacaaaatacgacattatatgtcca-----agctatgtactaaaacataaaagcaaaa 88  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||     ||||||| ||||||||||||||||||||    
T  40378664 caaagtaacaagatacaaacaaaagaacaaaatacaacattatatgtccaactccagctatggactaaaacataaaagcaaaa 40378582  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 40335624 - 40335571
Alignment:
Q  269 gtggtataatagtaacaaggctcaccaaggtgcaatggatgatatgatggcagt 322  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  40335624 gtggtataatagtaacaaggctcaccaaggtgcaggggatgatatgatgacagt 40335571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 12975326 - 12975387
Alignment:
Q  148 tcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaa 210  Q
    |||||||||||| |||||||| |||||||||  ||||||||||| ||||||||| ||||||||    
T  12975326 tcaaattgtttt-catataagctataagctgtgttcataagctatcttggagagcttatggaa 12975387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 34117654 - 34117569
Alignment:
Q  119 gttatttctttaacaaaagataaaacaagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatg 207  Q
    ||||||||||||||||||||||||| |||  |   |  ||| |||||||| |||||| ||||||||||||||| ||||||||| |||||    
T  34117654 gttatttctttaacaaaagataaaataaggta---ttatttacatataagctataagttgctttcataagctatcttggagagcttatg 34117569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 2568608 - 2568689
Alignment:
Q  121 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagag 201  Q
    ||||||| |||||| | ||||||||| || |||||||||||| |||||| |||||| || |||||||||||| | |||||||    
T  2568608 tatttctataacaagatataaaacaaagttaaattgtttttcgtataagctataagttgttttcataagctatcatggagag 2568689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 14295457 - 14295537
Alignment:
Q  121 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagag 201  Q
    ||||||| ||||||||||||||| || |||||| |||||| |||||||| ||||||||| |||| ||||||| | |||||||    
T  14295457 tatttctataacaaaagataaaataaagtcaaactgtttt-catataagctataagctgttttcgtaagctatcctggagag 14295537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 36325986 - 36326041
Alignment:
Q  145 aagtcaaattgtttttcatataagttataagctgctttcataagctaacttggaga 200  Q
    ||||||| ||||||||  ||||||||||||| ||||||| ||||||| ||||||||    
T  36325986 aagtcaatttgttttttgtataagttataagttgctttcgtaagctatcttggaga 36326041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 30217082 - 30217124
Alignment:
Q  170 tataagctgctttcataagctaacttggagagattatggaaat 212  Q
    |||||||||||||||||||||| | ||||||| ||||||||||    
T  30217082 tataagctgctttcataagctatcctggagagcttatggaaat 30217124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 7470636 - 7470592
Alignment:
Q  131 acaaaagataaaacaagtcaaattgtttttcatataagttataagc 176  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||||    
T  7470636 acaaaagataaaaaaagtcaaatt-attttcatataagttataagc 7470592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 18875310 - 18875402
Alignment:
Q  119 gttatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaa 211  Q
    ||||||||| || ||||||| |||| || ||||||||| ||| |||| ||||||||||||| ||| ||||| || | ||||||| |||||||||    
T  18875310 gttatttctatatcaaaagacaaaataaagtcaaattgattt-catacaagttataagctgttttaataagatatcctggagagcttatggaaa 18875402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 18902781 - 18902837
Alignment:
Q  155 gtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    |||||||||||||| |||||||||| |||||||||||  |||| ||| ||||||||||    
T  18902781 gtttttcatataagctataagctgc-ttcataagctattttggggagcttatggaaat 18902837  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 252
Target Start/End: Complemental strand, 9202867 - 9202733
Alignment:
Q  121 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttg-ttg 218  Q
    ||||||| || |||||||||||| || || |||||||||| ||||||||  |||||||| ||||||||| || |||| |||  ||||| ||||  | | |    
T  9202867 tatttctgtagcaaaagataaaataaagttaaattgtttt-catataagcaataagctgttttcataagttatcttgaagaacttatgaaaataagctgg 9202769  T
Q  219 aaacaacttatga--aatgtcataagctctttccat 252  Q
    ||||| |||||||  ||||||||||||| |||||||    
T  9202768 aaacagcttatgaacaatgtcataagctgtttccat 9202733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 18704156 - 18704085
Alignment:
Q  119 gttatttctttaacaaaagataaaacaagtcaaattgtttttcatataagttataagctgctttcataagcta 191  Q
    ||||||||| ||||||||||||||  |||||||  | ||||| ||||||| |||||| || ||||||||||||    
T  18704156 gttatttctataacaaaagataaataaagtcaagctattttt-atataagctataagttgttttcataagcta 18704085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 18857494 - 18857439
Alignment:
Q  145 aagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagag 201  Q
    ||||||||||||||||| |||||  ||||||||| |||||||||||  |||||||||    
T  18857494 aagtcaaattgtttttc-tataatctataagctgttttcataagctgtcttggagag 18857439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 26390897 - 26390818
Alignment:
Q  132 caaaagataaaacaagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    |||||||||||| |||| ||| |||||| |||||||| |||||| || |||| |||| || | ||||||| ||||||||||    
T  26390897 caaaagataaaataagttaaactgtttt-catataagctataagatggtttcctaagttatcctggagagcttatggaaat 26390818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 259
Target Start/End: Complemental strand, 41957534 - 41957430
Alignment:
Q  157 ttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttg-aaacaacttat-gaaatgtcataagctctttccataa 254  Q
    ||||||| |||||||||||||| |||||||||||| | | ||||  ||||| ||||  | || ||||||||||| || |||||||||||| ||||| |||    
T  41957534 ttttcatgtaagttataagctgttttcataagctatccttgagaacttatgaaaataagatgaaaacaacttatggacatgtcataagctgtttccgtaa 41957435  T
Q  255 actct 259  Q
     ||||    
T  41957434 gctct 41957430  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 212
Target Start/End: Complemental strand, 33787864 - 33787773
Alignment:
Q  121 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    ||||||| |||||||| ||||||||| ||||||||| ||| |||||||||||||||||| ||||||||| || ||||||||| ||||||||||    
T  33787864 tatttctataacaaaatataaaacaaagtcaaattgattt-catataagttataagctgttttcataagttatcttggagagcttatggaaat 33787773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 24838859 - 24838771
Alignment:
Q  124 ttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    ||||||||||||||||||||||| | | |||| |||| |||||||| ||||||||| |||||||||||| | ||||||| |||| |||||    
T  24838859 ttctttaacaaaagataaaacaaagactaattatttt-catataagctataagctgatttcataagctatcatggagagcttatagaaat 24838771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 212
Target Start/End: Original strand, 24782010 - 24782101
Alignment:
Q  121 tatttctttaacaaaagataaaa-caagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    ||||||| ||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||| |||| ||| | | ||||| ||||| ||||    
T  24782010 tatttctataacaaaagataaaatcaaatcaaattgtttt-catataagttataagctactttaataaactatccttgagagcttatgaaaat 24782101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 252
Target Start/End: Original strand, 6647338 - 6647471
Alignment:
Q  119 gttatttctttaacaaaagataaaacaagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttg 218  Q
    ||||||||| |||||||| |||| | ||||||||||  |||  ||||| ||||||| ||| |||||||||||| ||| ||||| ||||| ||||  ||||    
T  6647338 gttatttctataacaaaaaataata-aagtcaaattacttta-atataggttataatctgttttcataagctatcttagagagcttatgaaaataagttg 6647435  T
Q  219 -aaacaacttatgaa-atgtcataagctctttccat 252  Q
     ||||| |||||||| |||||||||||| |||||||    
T  6647436 aaaacatcttatgaacatgtcataagctatttccat 6647471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 4006665 - 4006735
Alignment:
Q  121 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagcta 191  Q
    ||||||| ||||||| ||||||| || |||||||||||||| ||||||| |||||| || ||||||||||||    
T  4006665 tatttctataacaaatgataaaataaagtcaaattgttttt-atataagctataagttgttttcataagcta 4006735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 281959 - 281876
Alignment:
Q  129 taacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    ||||||||||||||| || ||||| ||||||| |||||||| |||||||||  ||||||||||| | | ||||| | ||||||||    
T  281959 taacaaaagataaaataaagtcaacttgtttt-catataagctataagctgtgttcataagctatcctagagagctcatggaaat 281876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 10154184 - 10154263
Alignment:
Q  133 aaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    ||||||||||| || |||||| |||||| ||||||||||||||||| |||||||| |||| | || | || ||||||||||    
T  10154184 aaaagataaaataaagtcaaactgtttt-catataagttataagctactttcataggctagcatgaaaagcttatggaaat 10154263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 29274348 - 29274281
Alignment:
Q  121 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataag 188  Q
    ||||||| || |||||||||||| || ||||||||||||| |||||||| ||||| ||| |||||||||    
T  29274348 tatttctatagcaaaagataaaataaagtcaaattgtttt-catataagctataaactgttttcataag 29274281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 18628663 - 18628571
Alignment:
Q  120 ttatttctttaacaaaagataaaaca-agtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    ||||||||||||||||||  |||| | ||||||| ||||||| ||||||||||||| ||| ||||||||| || ||||||||| ||||||||||    
T  18628663 ttatttctttaacaaaaggaaaaatatagtcaaactgttttt-atataagttataaactgttttcataagttatcttggagagcttatggaaat 18628571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 30207691 - 30207599
Alignment:
Q  119 gttatttctttaacaaaagataaaacaagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    |||| |||| |||||||| |||||| || ||||| |||||| |||||||| |||||| || |||||||||||| ||| ||||||||||||||||    
T  30207691 gttagttctataacaaaaaataaaataaatcaaactgtttt-catataagctataagttgttttcataagctaccttagagagattatggaaat 30207599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 2996532 - 2996604
Alignment:
Q  129 taacaaaagataaaaca-agtcaaattgtttttcatataagttataagctgctttcataagctaacttggagag 201  Q
    ||||| ||||||||| | ||||||||||||||| |||||||||||||| || |||||||||||| |||||||||    
T  2996532 taacataagataaaatacagtcaaattgttttt-atataagttataagttgttttcataagctatcttggagag 2996604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 232
Target Start/End: Original strand, 17884019 - 17884131
Alignment:
Q  121 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttg- 218  Q
    ||||||| ||||||||||||||| || || |||||||||||  |||||||||| || || ||||||||||||  |||||||| ||||| ||||| | ||     
T  17884019 tatttctataacaaaagataaaataaagttaaattgtttttg-tataagttatcagttgttttcataagctatattggagagcttatgaaaattagctga 17884117  T
Q  219 aaacaacttatgaa 232  Q
    ||||||||||||||    
T  17884118 aaacaacttatgaa 17884131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 212
Target Start/End: Original strand, 49219088 - 49219181
Alignment:
Q  119 gttatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    ||||||||| |||||||| |||||| || |||||||| |||| |||||||| |||||| || |||||||| ||| |||  |||||||||||||||    
T  49219088 gttatttctataacaaaatataaaataaagtcaaattatttt-catataagctataagttgttttcataaactatcttaaagagattatggaaat 49219181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 268
Target Start/End: Original strand, 23819076 - 23819189
Alignment:
Q  157 ttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttg-aaacaacttat-gaaatgtcataagctctttccataa 254  Q
    ||||||||||||||||||  || |||||||||||| |||| |||| |||| |||||  | || ||||||||||| || |||||||||||| ||| | |||    
T  23819076 ttttcatataagttataacatgttttcataagctatcttgaagagcttatagaaataagatgaaaacaacttatggacatgtcataagctgttttcttaa 23819175  T
Q  255 actctaccgaacag 268  Q
    ||||| || |||||    
T  23819176 actcttccaaacag 23819189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 164
Target Start/End: Original strand, 34368828 - 34368872
Alignment:
Q  121 tatttctttaacaaaagataaaac-aagtcaaattgtttttcata 164  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||    
T  34368828 tatttctataacaaaagataaaacaaagtcaaattgtttttcata 34368872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 212
Target Start/End: Original strand, 52735073 - 52735164
Alignment:
Q  121 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    ||||||| ||||||||||||||| || ||||||||  ||| ||||||||||||| | || |||| ||||||| |||| |||| ||||||||||    
T  52735073 tatttctgtaacaaaagataaaataaagtcaaattacttt-catataagttatatgttgttttcgtaagctatcttgaagagcttatggaaat 52735164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 10192243 - 10192315
Alignment:
Q  129 taacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagag 201  Q
    |||||||||||| || || ||||||||||||| ||||||||||||||| || ||||| |||||| | |||||||    
T  10192243 taacaaaagatagaataaagtcaaattgtttt-catataagttataagttgttttcaaaagctatcctggagag 10192315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 209
Target Start/End: Complemental strand, 54325156 - 54325068
Alignment:
Q  121 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatgga 209  Q
    ||||||| | ||||||||||||| || |||||| |||||| |||||||| ||||||||  ||||| |||||| | ||||||| |||||||    
T  54325156 tatttctattacaaaagataaaataaagtcaaactgtttt-catataagctataagctattttcaaaagctatcatggagagtttatgga 54325068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 56480341 - 56480390
Alignment:
Q  163 tataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    |||||||||||||||| |||||||| ||| ||||||||| ||||| ||||    
T  56480341 tataagttataagctgttttcataaactatcttggagagcttatgaaaat 56480390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 1408379 - 1408327
Alignment:
Q  157 ttttcatataagttataagctgctttcataagctaacttggagagattatgga 209  Q
    ||||| |||||  |||||| ||||||||||||||||||| ||||| |||||||    
T  1408379 ttttcgtataatctataagttgctttcataagctaacttcgagagtttatgga 1408327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 3175913 - 3175972
Alignment:
Q  132 caaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagcta 191  Q
    |||||||||||| || ||||||||||||| ||  |||||||||||||| ||||||||||||    
T  3175913 caaaagataaaataaagtcaaattgtttt-caagtaagttataagctgttttcataagcta 3175972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 232
Target Start/End: Original strand, 43824235 - 43824346
Alignment:
Q  121 tatttctttaacaaaagataaaacaagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttg-a 219  Q
    |||||||||| ||||||||||   || ||||||| |||| |||||||||||||||||  |||| |||| || | |||| || ||||||||||  | || |    
T  43824235 tatttctttagcaaaagataattaaaatcaaattctttt-catataagttataagcttttttcgtaagttatcctggaaagcttatggaaataagctgaa 43824333  T
Q  220 aacaacttatgaa 232  Q
    |||||||||||||    
T  43824334 aacaacttatgaa 43824346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 49085948 - 49086027
Alignment:
Q  129 taacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatgg 208  Q
    ||||||||||||||| || |||||| | |||| |||| |||||||||| || |||||||||||| ||| ||||| ||||||    
T  49085948 taacaaaagataaaataatgtcaaactatttt-catacaagttataagttgttttcataagctaccttagagagcttatgg 49086027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 49517019 - 49517091
Alignment:
Q  119 gttatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagcta 191  Q
    ||||||||| ||||||||||||||| || ||||||||||||| ||| |||| ||||||||| ||||||||||||    
T  49517019 gttatttctataacaaaagataaaataaagtcaaattgtttt-catttaagctataagctgttttcataagcta 49517091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 212
Target Start/End: Original strand, 7472263 - 7472353
Alignment:
Q  121 tatttctttaacaaaagataaaacaagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    ||||||| |||||||||||| || |||| |||||||||||  |||||  ||||||||| || ||||||||| ||||||||| ||||| ||||    
T  7472263 tatttctataacaaaagatataataagttaaattgttttt-gtataatctataagctgtttccataagctatcttggagagcttatgaaaat 7472353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 25006128 - 25006074
Alignment:
Q  145 aagtcaaattgtttttcatataagttataagctgctttcataagctaacttggaga 200  Q
    ||||||||||||||| |||||||| |||||| || |||||||||||| ||||||||    
T  25006128 aagtcaaattgtttt-catataagctataagttgttttcataagctatcttggaga 25006074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 6231921 - 6231863
Alignment:
Q  135 aagataaaacaagtcaaattgtttttcatataagttataagctgctttcataagctaac 193  Q
    ||||||||  |||||||| ||||||||||||||  ||||||||| |||| |||||||||    
T  6231921 aagataaataaagtcaaactgtttttcatataatctataagctgttttcgtaagctaac 6231863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 268
Target Start/End: Complemental strand, 35590969 - 35590863
Alignment:
Q  163 tataagttataagctgctttcataagctaacttggagagattatggaaatttgttg-aaacaacttatgaaatgtcataagctctttccataaactctac 261  Q
    |||||| ||||||  | |||||||||||| | ||||||| ||||||||||  | || |||||||| ||||| || |||| ||| ||||||||| ||||||    
T  35590969 tataagctataagtcgatttcataagctatcatggagagcttatggaaataagctgaaaacaactgatgaactgccatatgctgtttccataagctctac 35590870  T
Q  262 cgaacag 268  Q
    | |||||    
T  35590869 caaacag 35590863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 4548684 - 4548752
Alignment:
Q  133 aaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagag 201  Q
    ||||||||||| || |||||| ||||||| ||| |||| |||||||| |||||||||||| |||||||||    
T  4548684 aaaagataaaataaagtcaaactgttttt-atacaagtcataagctgttttcataagctatcttggagag 4548752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 4549625 - 4549561
Alignment:
Q  157 ttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttgaaa 221  Q
    |||||||| ||| |||||| || |||||||||| | | ||||||| |||| ||||||||||||||    
T  4549625 ttttcatacaagctataagatgttttcataagcaatcctggagagcttattgaaatttgttgaaa 4549561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 7274060 - 7273973
Alignment:
Q  119 gttatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattat 206  Q
    ||||||| | ||||||||||| ||| || ||||||||||||| |||| ||||||||||||| || ||||| ||| |||| |||| ||||    
T  7274060 gttatttttataacaaaagatgaaataaagtcaaattgtttt-catacaagttataagctgtttccataaactaccttgaagagcttat 7273973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 212
Target Start/End: Complemental strand, 30456569 - 30456478
Alignment:
Q  121 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    |||||||  |||||||||||||| || ||||||||||||| |||||||||||||||  | |||||||| ||| ||||||||| ||||| ||||    
T  30456569 tatttctaaaacaaaagataaaataaagtcaaattgtttt-catataagttataagtggttttcataaactatcttggagagcttatgaaaat 30456478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 6263446 - 6263373
Alignment:
Q  157 ttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttgaaacaacttatg 230  Q
    |||||||||||||||||||||| ||||||||||||   |||||||  |||||||||  | | ||||||||||||    
T  6263446 ttttcatataagttataagctgatttcataagctattatggagagcatatggaaataagctaaaacaacttatg 6263373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 28165044 - 28165142
Alignment:
Q  123 tttctttaacaaaagataaaa-caagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttgaaa 221  Q
    ||||| |||||||||||||||  ||||||||||| |||| ||||||| ||||| |||  || |||||||| | ||||||| ||||||||||  |||||||    
T  28165044 tttctataacaaaagataaaatgaagtcaaattg-ttttaatataagctataaactgtctttataagctatcatggagagcttatggaaataagttgaaa 28165142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 38010674 - 38010756
Alignment:
Q  130 aacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    ||||||||||||||||| | ||||||||||| |||||||| ||||||||| |||||||| ||| | | ||||  ||||||||||    
T  38010674 aacaaaagataaaacaaagccaaattgtttt-catataagctataagctgttttcataatctatcctagagaacttatggaaat 38010756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 18350790 - 18350740
Alignment:
Q  157 ttttcatataagttataagctgctttcataagctaacttggagagattatg 207  Q
    ||||| |||||||||||||||| |||||||||||| | ||||||| |||||    
T  18350790 ttttcgtataagttataagctgttttcataagctatcatggagagcttatg 18350740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 27548214 - 27548291
Alignment:
Q  121 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttgga 198  Q
    |||||| ||| |||||||||||| || ||| ||||||||| ||| |||| ||||||||| |||||||||||| ||||||    
T  27548214 tatttccttagcaaaagataaaataaagtctaattgtttt-catttaagctataagctgttttcataagctatcttgga 27548291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 44821935 - 44821980
Alignment:
Q  145 aagtcaaattgtttttcatataagttataagctgctttcataagcta 191  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||||    
T  44821935 aagtcaaattgtttttg-tataagttataagctgttttcataagcta 44821980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 1417223 - 1417295
Alignment:
Q  129 taacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagag 201  Q
    ||||||||||||||| || ||||||||||||| ||||||||  ||||| || |||||||||||| | |||||||    
T  1417223 taacaaaagataaaataaagtcaaattgtttt-catataagcaataagttgttttcataagctagcatggagag 1417295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 35536058 - 35536114
Alignment:
Q  121 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagct 177  Q
    ||||||| ||||| ||||||||| || ||||||||||||| |||||||||||||||||    
T  35536058 tatttctataacataagataaaataaagtcaaattgtttt-catataagttataagct 35536114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 212
Target Start/End: Original strand, 22759145 - 22759228
Alignment:
Q  129 taacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    ||||||||||||||| || |  |||||||||| |||||||| || |||||| |||||||||||| |  |||||| ||||||||||    
T  22759145 taacaaaagataaaataaaggaaaattgtttt-catataagctaaaagctgatttcataagctatccaggagagcttatggaaat 22759228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 212
Target Start/End: Complemental strand, 27481413 - 27481322
Alignment:
Q  121 tatttctttaacaaaagataaaac-aagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    ||||||| ||||||| |||||||| |||||||| |||||  |||||||| |||||| |  |||||||||||| | |||| || ||||||||||    
T  27481413 tatttctataacaaaggataaaacgaagtcaaactgtttc-catataagctataagttattttcataagctatcatggatagcttatggaaat 27481322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 39591588 - 39591537
Alignment:
Q  119 gttatttctttaacaaaagataaaa-caagtcaaattgtttttcatataagtt 170  Q
    ||||||||| |||||||||||||||  ||||||||||| ||||||||||||||    
T  39591588 gttatttctataacaaaagataaaataaagtcaaattg-ttttcatataagtt 39591537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 47177587 - 47177666
Alignment:
Q  121 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggaga 200  Q
    ||||||| || ||||| | ||||||| || |||||||||| |||||||| ||||||||| ||||| |||||| ||||||||    
T  47177587 tatttctatatcaaaatacaaaacaaagttaaattgtttt-catataagctataagctgttttcaaaagctatcttggaga 47177666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 9836937 - 9836882
Alignment:
Q  157 ttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    ||||||||||||||| || ||| |||||||||||| ||||||||| ||||||||||    
T  9836937 ttttcatataagttacaacctgttttcataagctatcttggagagcttatggaaat 9836882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 11795079 - 11795134
Alignment:
Q  157 ttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    |||||||||||||||||||||| ||||||||||||   ||||||| ||||||||||    
T  11795079 ttttcatataagttataagctgatttcataagctattatggagagcttatggaaat 11795134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 8062322 - 8062371
Alignment:
Q  163 tataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    |||||| ||||||||| |||||||||||| ||| ||||||||||||||||    
T  8062322 tataagctataagctgttttcataagctatcttagagagattatggaaat 8062371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 8823511 - 8823427
Alignment:
Q  122 atttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattat 206  Q
    |||||| |||||||||||||||||| |||| |||||| || || |||||||||| || ||||||||||||| ||||| ||| ||||    
T  8823511 atttctataacaaaagataaaacaaagtcagattgttctt-atgtaagttataatctactttcataagctatcttggcgagcttat 8823427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 4510988 - 4511047
Alignment:
Q  130 aacaaaagat-aaaacaagtcaaattgtttttcatataagttataagctgctttcataagc 189  Q
    |||||||||| |||| |||||||||| ||| ||||||||||||||||||| ||||||||||    
T  4510988 aacaaaagattaaaaaaagtcaaatt-tttctcatataagttataagctgttttcataagc 4511047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 6509397 - 6509331
Alignment:
Q  145 aagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    |||||||||||| ||| ||||||| ||||||||| |||||||||||| | ||||||| |||| |||||    
T  6509397 aagtcaaattgtattt-atataagctataagctgttttcataagctatcctggagagcttattgaaat 6509331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 259
Target Start/End: Complemental strand, 11569527 - 11569436
Alignment:
Q  170 tataagctgctttcataagctaacttggagagattatggaaatttgttg-aaacaacttatg-aaatgtcataagctctttccataaactct 259  Q
    ||||||||| |||||||||||| | |||||||||| || ||||  | || |||||||||||| | |||||||||||| ||||||||| ||||    
T  11569527 tataagctgttttcataagctatcatggagagattttgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctct 11569436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 28769422 - 28769367
Alignment:
Q  157 ttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    ||||| |||||| ||||||||| ||||||||||||  |||||||| ||||||||||    
T  28769422 ttttcttataagctataagctgttttcataagctattttggagagtttatggaaat 28769367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 12361141 - 12361210
Alignment:
Q  119 gttatttctttaacaaaagataaaac-aagtcaaattgtttttcatataagttataagctgctttcataag 188  Q
    ||||||||| |||  ||||||||||  ||||||||||||||| |||||||| ||||||||| |||||||||    
T  12361141 gttatttctataaataaagataaaatgaagtcaaattgtttt-catataagctataagctgttttcataag 12361210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 8062495 - 8062566
Alignment:
Q  140 aaaacaagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    |||| ||||||||||||||| |||||||| |||||| || | |||||||||| ||| ||||| ||||| ||||    
T  8062495 aaaaaaagtcaaattgtttt-catataagctataagatgttctcataagctatcttagagagtttatgaaaat 8062566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 31705047 - 31705127
Alignment:
Q  133 aaaagataaaa-caagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    ||||||||||| || ||||||||   ||||||||||| ||||||||| |||||||||||  | | ||||| ||||||||||    
T  31705047 aaaagataaaatcatgtcaaattacgtttcatataagctataagctgttttcataagctgtccttgagagtttatggaaat 31705127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 212
Target Start/End: Original strand, 34551079 - 34551162
Alignment:
Q  129 taacaaaagataaaa-caagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    ||||||||||||| | |||||||||||||||| ||| ||||||||||| || |||| |||| || | ||||||| ||||| ||||    
T  34551079 taacaaaagataacatcaagtcaaattgtttt-catttaagttataagttgttttcttaagttatcctggagagcttatgaaaat 34551162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 41470388 - 41470344
Alignment:
Q  163 tataagttataagctgctttcataagctaacttggagagattatg 207  Q
    |||||||| ||||||| |||||||||||| |||| ||||||||||    
T  41470388 tataagttgtaagctgttttcataagctatcttgaagagattatg 41470344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 10143121 - 10143211
Alignment:
Q  119 gttatttctttaacaaaagataaaa-caagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatgga 209  Q
    ||||||||| |||||||||||||||  |||||||| ||||||| ||||||| |||||| |  |||||||||||| | ||||||| |||||||    
T  10143121 gttatttctataacaaaagataaaattaagtcaaactgttttt-atataagctataagtttttttcataagctatcatggagagtttatgga 10143211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 35099682 - 35099618
Alignment:
Q  157 ttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttgaaa 221  Q
    |||||||  |||||||||||||||||||||||||| | | ||||| ||||||||||  |||||||    
T  35099682 ttttcattaaagttataagctgctttcataagctatccttgagagcttatggaaatcggttgaaa 35099618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 11513858 - 11513928
Alignment:
Q  130 aacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggaga 200  Q
    |||||||||||||| || ||||||||||||| |||||||| |||||| || |||||||||||| | ||||||    
T  11513858 aacaaaagataaaataaagtcaaattgtttt-catataagctataagttgttttcataagctatcatggaga 11513928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 18066115 - 18066158
Alignment:
Q  157 ttttcatataagttataagctgctttcataagctaacttggaga 200  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||    
T  18066115 ttttcatataagctataagctgttttcataagctatcttggaga 18066158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 18179323 - 18179280
Alignment:
Q  157 ttttcatataagttataagctgctttcataagctaacttggaga 200  Q
    |||||||||||| |||||||||||||||||||||| | ||||||    
T  18179323 ttttcatataagctataagctgctttcataagctatcctggaga 18179280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 22681295 - 22681213
Alignment:
Q  130 aacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    ||||||||||||||||| | ||||||||||| |||||||| ||||||||| |||||||| ||| | | ||||  ||||||||||    
T  22681295 aacaaaagataaaacaaagccaaattgtttt-catataagctataagctgttttcataatctatcctagagaacttatggaaat 22681213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 11488277 - 11488319
Alignment:
Q  170 tataagctgctttcataagctaacttggagagattatggaaat 212  Q
    |||||||||||||||||||||| | ||||||||||||| ||||    
T  11488277 tataagctgctttcataagctatcctggagagattatgcaaat 11488319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 15377752 - 15377786
Alignment:
Q  157 ttttcatataagttataagctgctttcataagcta 191  Q
    |||||||||||||||||||||| ||||||||||||    
T  15377752 ttttcatataagttataagctgttttcataagcta 15377786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 212
Target Start/End: Complemental strand, 656896 - 656805
Alignment:
Q  121 tatttctttaacaaaagataaaaca-agtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    ||||||| ||||||||||||||| | | |||||||||||| | |||||| | |||| || |||||||||||| |||| |||| ||||| ||||    
T  656896 tatttctataacaaaagataaaatataatcaaattgtttt-cgtataagctgtaagttgatttcataagctatcttgcagagcttatgaaaat 656805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 16353847 - 16353891
Alignment:
Q  156 tttttcatataagttataagctgctttcataagctaacttggaga 200  Q
    ||||||||||||| ||||||||| ||| |||||||| ||||||||    
T  16353847 tttttcatataagctataagctgtttttataagctatcttggaga 16353891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 18962149 - 18962066
Alignment:
Q  129 taacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    ||||||||||||||| || || ||| |||||| |||||||| ||||| ||  |||||||||||| | |||||||| |||||||||    
T  18962149 taacaaaagataaaataaagttaaactgtttt-catataagctataaactattttcataagctatcatggagagactatggaaat 18962066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 43205296 - 43205360
Alignment:
Q  157 ttttcatataagttataagctgctttcataagctaacttggagagattatggaaatttgttgaaa 221  Q
    |||||||||||| ||||| ||| |||||||||||| |  |||||| ||||||||||  |||||||    
T  43205296 ttttcatataagatataatctgttttcataagctatcacggagagcttatggaaataagttgaaa 43205360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 268
Target Start/End: Original strand, 37273107 - 37273234
Alignment:
Q  145 aagtcaaattgtttttcatataagttataag---ctgctttcataagctaacttggagagattatggaaatttgttg-aaacaacttat-gaaatgtcat 239  Q
    |||||||||||||||| ||||||| |||||    ||| |||||||||||| ||||||||  ||||||||||  |||| ||||||||||| || |||||||    
T  37273107 aagtcaaattgttttt-atataagatataataaactgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcat 37273205  T
Q  240 aagctctttccataaactctaccgaacag 268  Q
    ||| | ||||||||| |||| || |||||    
T  37273206 aagttgtttccataagctctcccaaacag 37273234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 39602287 - 39602204
Alignment:
Q  163 tataagttataagctgctttcataagctaacttggagagattatggaaatttgttg-aaacaacttatgaa-atgtcataagct 244  Q
    |||||||||||||||| |||||||||||| ||| ||||  ||||| ||||  |||| |||||| ||||||| ||||||||||||    
T  39602287 tataagttataagctgttttcataagctatctttgagaacttatgaaaataagttgaaaacaatttatgaacatgtcataagct 39602204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 1125878 - 1125796
Alignment:
Q  129 taacaaaagataaaa-caagtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaa 210  Q
    |||| |||||||||| ||| ||||| ||||||||||||||| |||||  || |||| |||| || ||||||||| ||||||||    
T  1125878 taactaaagataaaatcaattcaaactgtttttcatataagctataacttgttttcttaagttatcttggagagcttatggaa 1125796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 2201092 - 2201169
Alignment:
Q  134 aaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatggaaa 211  Q
    ||||||||||||| |||||| |||||| |||||||| ||||||||| |||||| ||||| |||||| || ||| |||||    
T  2201092 aaagataaaacaaagtcaaactgtttt-catataagctataagctgttttcattagctatcttggatagtttaaggaaa 2201169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 23530296 - 23530234
Alignment:
Q  129 taacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagct 190  Q
    ||||||||||||||| || |||||||| ||||||||||||  |||||| || |||||||||||    
T  23530296 taacaaaagataaaataaagtcaaattatttttcatataaagtataagttgttttcataagct 23530234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 24158581 - 24158531
Alignment:
Q  162 atataagttataagctgctttcataagctaacttggagagattatggaaat 212  Q
    |||||||| |||||||| |||||||||||| | ||||||| ||||||||||    
T  24158581 atataagtaataagctgttttcataagctatcctggagagcttatggaaat 24158531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 24887402 - 24887315
Alignment:
Q  121 tatttctttaacaaaagataaaacaa-gtcaaattgtttttcatataagttataagctgctttcataagctaacttggagagattatgg 208  Q
    ||||||| |||||| |||||||| || |||||| ||| || |||||||| || |||||| |||||||||||| | ||||||| ||||||    
T  24887402 tatttctataacaatagataaaataaagtcaaactgtatt-catataagctaaaagctgttttcataagctatcctggagagcttatgg 24887315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 52618990 - 52619034
Alignment:
Q  157 ttttcatataagttataagctgctttcataagctaacttggagag 201  Q
    |||||||||||||||||||||| ||||| |||||| |||| ||||    
T  52618990 ttttcatataagttataagctgttttcacaagctatcttgaagag 52619034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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