View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14609_high_8 (Length: 316)
Name: NF14609_high_8
Description: NF14609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14609_high_8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 316
Target Start/End: Complemental strand, 43843781 - 43843476
Alignment:
| Q |
11 |
caaaggtaacggaaaacttattcctcatgtggtcaaactttgggttgaaagctacgaaaaggatccaagatctgctatggttgagctcttgacaatgctg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43843781 |
caaaggtaacggaaaacttattcctcatgtggtcaaactttgggttgaaagctacgaaaaggatccaagatctgctatggttgagctcttgacaatgctg |
43843682 |
T |
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| Q |
111 |
tttgaggtacaaaagttaatggagtgttagggtgtgacatttttagttttatgtgaaaaatctagggcctagagtaggtattgtaaaaacatgggaactt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43843681 |
tttgaggtacaaaagttaatggagtgttagggtgtgacatttttagttttatgtgaaaaatctagggcctagagtaggtattgtaaaaactcgggaactt |
43843582 |
T |
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| Q |
211 |
tattatttcatcattgcttaaagattttcagggaaagtaaacatcgttatcaattttggaacacttactgatagcagcaaaataaaattttaaatggtgt |
310 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43843581 |
tattatttcatcattgcttaaagattttcaggggaagtaaacatcgttatcaattttggaacacttactgatagcagcaaaataattttttaaatggtgt |
43843482 |
T |
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| Q |
311 |
aggcat |
316 |
Q |
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|||||| |
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| T |
43843481 |
aggcat |
43843476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 18219683 - 18219791
Alignment:
| Q |
11 |
caaaggtaacggaaaacttattcctcatgtggtcaaactttgggttgaaagctacgaaaaggatccaagatctgctatggttgagctcttgacaatgctg |
110 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||||||||| |
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| T |
18219683 |
caaaggtaacggaaaacttattcctcatgtagtaaaactttgggttgaaagctatgaaaaagatccaaaatctgctatggttgaactcttgacaatgctg |
18219782 |
T |
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| Q |
111 |
tttgaggta |
119 |
Q |
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||||||||| |
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| T |
18219783 |
tttgaggta |
18219791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 18145978 - 18145870
Alignment:
| Q |
11 |
caaaggtaacggaaaacttattcctcatgtggtcaaactttgggttgaaagctacgaaaaggatccaagatctgctatggttgagctcttgacaatgctg |
110 |
Q |
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|||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||||||||| |
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| T |
18145978 |
caaaggtaacggcaaacttattcctcatgtagtaaaactttgggttgaaagctatgaaaaagatccaaaatctgctatggttgaactcttgacaatgctg |
18145879 |
T |
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| Q |
111 |
tttgaggta |
119 |
Q |
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||||||||| |
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| T |
18145878 |
tttgaggta |
18145870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 19862789 - 19862900
Alignment:
| Q |
11 |
caaaggtaacggaaaacttattcctcatgtggtcaaactttgggttgaaagctacgaaaaggatccaagatctgctatggttgagctcttgacaatgctg |
110 |
Q |
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||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||| |||| |
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| T |
19862789 |
caaagataatggcaaacttattcctcatgctgtcaaactttgggttgaaagctacgaaaaggatcaaagatctgcgatggatgaactcttgacaacgctg |
19862888 |
T |
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| Q |
111 |
tttgaggtacaa |
122 |
Q |
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| T |
19862889 |
gttgaggtacaa |
19862900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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