View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14609_low_2 (Length: 425)
Name: NF14609_low_2
Description: NF14609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14609_low_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 64 - 425
Target Start/End: Original strand, 15943979 - 15944340
Alignment:
| Q |
64 |
atagtaagatagtaactgctgtagctgcaactgcagcaggaacattagttctttctgctctaattttcttctttgttattaagtgttgtagagcaaagag |
163 |
Q |
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| T |
15943979 |
atagtaagatagtaactgctgtagctgcaactgcagcaggaacattagttctttctgctctaattttcttctttgttaataagtgttgtagagcaaagag |
15944078 |
T |
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| Q |
164 |
aagaaatgtgattgtaaacaataacaacacttcttctagaccaagtttagaacatagaaatgctgtgcctcaagcaaaagcttttgagagaattgaaggt |
263 |
Q |
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| T |
15944079 |
aagaaatgtgattgtaaacaataacaacacttcttctagaccaagtttagaacatagaaatgctgtgcctcaagcaaaagcttttgagagaattgaaggt |
15944178 |
T |
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| Q |
264 |
aatatcaagggacttattgttgatgaagatggtttagatgttgtttattggagaaagcttcaagatcaaaatagtaacaaggatttgcaaaagggtgttg |
363 |
Q |
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| T |
15944179 |
aatatcaagggacttattgttgatgaagatggtttagatgttgtttattggagaaagcttcaagatcaaaatattaacaaggatttgcaaaagggtgttg |
15944278 |
T |
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| Q |
364 |
ttttggatagtcctagaaacaatgaaggttatgatcatgaagaaaatcaagaggaaaaatca |
425 |
Q |
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| T |
15944279 |
ttttggatagtcctagaaacaatgaaggttatgatcatgaagaaaatcaagaggaaaaatca |
15944340 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 26282696 - 26282745
Alignment:
| Q |
279 |
attgttgatgaagatggtttagatgttgtttattggagaaagcttcaaga |
328 |
Q |
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| T |
26282696 |
attgttgatgaagatggtttagatgtgatttattggagaaaacttgaaga |
26282745 |
T |
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