View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14609_low_3 (Length: 213)
Name: NF14609_low_3
Description: NF14609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14609_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 493377 - 493189
Alignment:
| Q |
16 |
gaatcatcacccggcacaatcagcaacagcttcctttcctttttcgaaatgaccaaacgactaccctgctttcacttcttccttacatctnnnnnnnnnn |
115 |
Q |
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| T |
493377 |
gaatcatcacccggcacaatcagaaacagcttcctttcctttttcgaaatgaccaaacgactaccctgctttcacttcttccttacatctaaaaacggaa |
493278 |
T |
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| Q |
116 |
nnnnnnnnnnnnnttacaagtcttaacttcaatcccgaaaaaccaaatctaaatgcataaaacaacaggagttataaacatctgtgctc |
204 |
Q |
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| T |
493277 |
agaaaaaaaaaaattacaaatcttaacttcaatcccaaaaaaccaaatctaaatgcatgaaacaacaggagttataaacatctgtgctc |
493189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 490393 - 490348
Alignment:
| Q |
159 |
caaatctaaatgcataaaacaacaggagttataaacatctgtgctc |
204 |
Q |
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| T |
490393 |
caaatctaaatgcatataacaacagtagttataaacatctgtgctc |
490348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 500969 - 500879
Alignment:
| Q |
15 |
agaatcatcacccggcacaatcagcaacagcttcctttcctttttcgaaatgaccaaacgactaccctgctttcacttcttccttacatct |
105 |
Q |
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| T |
500969 |
agaatcagcactcggcacaaatggcaatagattccatttctttttcgaactcacccaacgactaccccgctttctcttcttccttacatct |
500879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 19124540 - 19124584
Alignment:
| Q |
160 |
aaatctaaatgcataaaacaacaggagttataaacatctgtgctc |
204 |
Q |
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| T |
19124540 |
aaatctaaatgcatataacaacaatggttataaacatctgtgctc |
19124584 |
T |
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