View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1460_high_19 (Length: 349)
Name: NF1460_high_19
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_high_19 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 37540975 - 37540627
Alignment:
| Q |
1 |
aaccaaacatacactctctgtggttgactattctcaactttctcatgatgattactttatgtttgcagcatggaaatggaatactcactggattcaacag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37540975 |
aaccaaacatacactctctgtggttgactattctcaactttctcatgatgattactttatatttgcagcatggaaatggaatactcactggattcaacag |
37540876 |
T |
|
| Q |
101 |
tactggaaaacggcccttcaaagcggtaatatatcttctttgcctttgtaaaagatattatatactattggaattcaaccgagtggttaatctcacatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37540875 |
tactggaaaacggcccttcaaagcggtaatatatcttctttgcctttgtaaaagatattatatactattggaattcaaccgagtggttaatctcacatct |
37540776 |
T |
|
| Q |
201 |
actagaaaaagaaataagctaaacgaataatatgcaactgttactttaggttaaggacagaatcatatgcatctagctccaaggcaggtcgtgagaaagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37540775 |
actagaaaaagaaataagctaaacgaataatatgcaactgttactttaggttaaggacagaatcatatgcatctagctccaaggcaggtcgtgagaaagt |
37540676 |
T |
|
| Q |
301 |
gcgaagggataaattgaatgacaggtttgctattattttgcaactttct |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37540675 |
gcgaagggataaattgaatgacaggtttgctattattttgcaactttct |
37540627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 37541273 - 37541180
Alignment:
| Q |
43 |
tcatgatgattactttatgtttgcagcatggaaatggaatactcactggattcaacagtactggaaaacggcccttcaaagcggtaatatatct |
136 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||||||| ||||| ||||||||||| ||| |||||| ||||||||||||||||||||||| |
|
|
| T |
37541273 |
tcatgattattactttatatttgcagcttggaaatggattactccctggattcaactgtaatggaaagtaacccttcaaagcggtaatatatct |
37541180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University