View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1460_high_20 (Length: 332)

Name: NF1460_high_20
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1460_high_20
NF1460_high_20
[»] chr7 (1 HSPs)
chr7 (7-318)||(8694092-8694403)
[»] chr3 (21 HSPs)
chr3 (38-204)||(28079912-28080078)
chr3 (7-318)||(28144275-28144583)
chr3 (25-318)||(27998975-27999265)
chr3 (38-212)||(28178527-28178701)
chr3 (41-318)||(28130347-28130621)
chr3 (7-204)||(17748738-17748935)
chr3 (7-204)||(19050058-19050255)
chr3 (25-318)||(28047811-28048101)
chr3 (236-315)||(28471950-28472029)
chr3 (236-315)||(28491991-28492070)
chr3 (236-315)||(28512972-28513051)
chr3 (74-204)||(27963244-27963374)
chr3 (143-204)||(27910291-27910352)
chr3 (66-204)||(27463825-27463963)
chr3 (236-318)||(27910180-27910262)
chr3 (232-318)||(28079801-28079887)
chr3 (161-321)||(11409185-11409342)
chr3 (156-200)||(26211865-26211909)
chr3 (156-200)||(26239072-26239116)
chr3 (232-317)||(28178425-28178510)
chr3 (159-204)||(28512898-28512943)
[»] chr4 (4 HSPs)
chr4 (77-211)||(9329560-9329694)
chr4 (268-318)||(9329928-9329978)
chr4 (77-211)||(9383343-9383477)
chr4 (268-318)||(9383711-9383761)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 7 - 318
Target Start/End: Original strand, 8694092 - 8694403
Alignment:
Q  7 gattattcttgttgctcagaagcatctccaaaaatggaaggtggcttcttaatcgacaaagacattgtacgattacattctggaaaaatgtcgatcagat 106  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8694092 gattgttcttgttgctcagaagcatctccagaaatggaaggtggcttcttaatcgacaaagacattgtacgattacattctggaaaaatgtcgatcagaa 8694191  T
Q  107 tcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaatatgtatttcagcttatcacaactttttattgtgatggatat 206  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8694192 tcggtatgtcactgagctccattttttcgagggattcaagcttgagatcttggccaaatatgtatttcagcttatcacaactttttattgtgatggatat 8694291  T
Q  207 tagtgccggacatttctgaaacaccgagagaaacggaagtattaatttaaaacttggacatttctcaatactaataacttccagtttctgaaacattaag 306  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8694292 tagtgccggacatttctgaaacactgagagaaacggaagtattaattcaaagcttggacatttctcaatactaataacttccagtttctgaaacattaag 8694391  T
Q  307 ccttgacttgtg 318  Q
    ||||||||||||    
T  8694392 ccttgacttgtg 8694403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 38 - 204
Target Start/End: Complemental strand, 28080078 - 28079912
Alignment:
Q  38 aaatggaaggtggcttcttaatcgacaaagacattgtacgattacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctag 137  Q
    ||||||||  ||||||||| |  ||| ||||||||||||||||||||||||| ||||||||||| | |||||||||| |||  |||||||||||||  |     
T  28080078 aaatggaaaatggcttcttgagggacgaagacattgtacgattacattctgggaaaatgtcgatgaaattcggtatgccaccaagctccatttttttgac 28079979  T
Q  138 ggattcaagcttgagatcttggccaaatatgtatttcagcttatcacaactttttattgtgatggat 204  Q
    |||  |||||  || |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28079978 ggaaccaagcaggacatcttggccaaacatgtatttcagcttatcacaactttttattgtgatggat 28079912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 318
Target Start/End: Complemental strand, 28144583 - 28144275
Alignment:
Q  7 gattattcttgttgctcagaagcatctccaaaaatggaaggtggcttcttaatcgacaaagacattgtacgattacattctggaaaaatgtcgatcagat 106  Q
    |||| ||||||| |||  |||||||||||| ||||||||| || | ||||||| ||  ||| ||| ||||||||||||| ||| ||||||||||| | ||    
T  28144583 gattgttcttgtggcttggaagcatctccagaaatggaagatgacctcttaatggatgaagtcatggtacgattacattttgggaaaatgtcgatgaaat 28144484  T
Q  107 tcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaatatgtatttcagcttatcacaactttttattgtgatggatat 206  Q
    | |||||||||   ||||||||| |||  |||||  |||||| || ||||| |||||||||||||||||| |||||||||||||  ||||||||||||      
T  28144483 ttggtatgtcatgaagctccattgttttgagggaaccaagctggacatctttgccaaatatgtatttcagattatcacaactttcaattgtgatggattc 28144384  T
Q  207 tagtgccggacatttctgaaacaccgagagaaacggaagtattaatttaaaacttggacatttctcaatactaataacttccagtttctgaaacattaag 306  Q
    |||||| ||| | |  |||    |  |||||||||||||||  |||| ||     ||||||||||||||||||| ||| |||||||||||||| ||| ||    
T  28144383 tagtgctggaaaatcatga---gcatagagaaacggaagtacaaattcaagtgccggacatttctcaatactaagaacctccagtttctgaaatattgag 28144287  T
Q  307 ccttgacttgtg 318  Q
    ||||||||||||    
T  28144286 ccttgacttgtg 28144275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 318
Target Start/End: Complemental strand, 27999265 - 27998975
Alignment:
Q  25 gaagcatctccaaaaatggaaggtggcttcttaatcgacaaagacattgtacgattacattctggaaaaatgtcgatcagattcggtatgtcactgagct 124  Q
    |||||||||||| ||||||||| || ||||||||| ||||||||||||||||||||||||||||| || ||||| |||| ||| ||||  |||   || |    
T  27999265 gaagcatctccagaaatggaagatgtcttcttaatggacaaagacattgtacgattacattctgggaatatgtcaatcatatttggtaaatcatcaagat 27999166  T
Q  125 ccattttttctagggattcaagcttgagatcttggccaaatatgtatttcagcttatcacaactttttattgtgatggatattagtgccggacatttctg 224  Q
    | |||| |   |||||  |||| |||| ||||| ||||||||||||||||||||||||||||||||  ||| ||||||||  |||||| |||   |  ||    
T  27999165 caatttctctgagggaaccaagtttgacatctttgccaaatatgtatttcagcttatcacaactttcaattctgatggattctagtgctggaagatcatg 27999066  T
Q  225 aaacaccgagagaaacggaagtattaatttaaaacttggacatttctcaatactaataacttccagtttctgaaacattaagccttgacttgtg 318  Q
    |    |  ||||||||||||||||| ||| ||  |||||||| || | ||||| || ||  |||||||||||||| ||| ||||||||||||||    
T  27999065 a---gcatagagaaacggaagtattgattcaattcttggacaattataaataccaagaaactccagtttctgaaatattgagccttgacttgtg 27998975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 38 - 212
Target Start/End: Complemental strand, 28178701 - 28178527
Alignment:
Q  38 aaatggaaggtggcttcttaatcgacaaagacattgtacgattacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctag 137  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||| |||||| ||| ||   ||||||| |||||  ||    
T  28178701 aaatggaagatggcttcttaatggacaaagacattgtaggattacattctgggaaaatgtcgatcaaattcggaatgccatcaagctccaattttttgag 28178602  T
Q  138 ggattcaagcttgagatcttggccaaatatgtatttcagcttatcacaactttttattgtgatggatattagtgc 212  Q
     ||  |||| |||| |||||| |||||||||||||||| ||| ||||||  || |||| |||||||| |||||||    
T  28178601 cgaaccaagtttgacatcttgaccaaatatgtatttcaacttgtcacaatcttctattttgatggattttagtgc 28178527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 318
Target Start/End: Complemental strand, 28130621 - 28130347
Alignment:
Q  41 tggaaggtggcttcttaatcgacaaagacattgtacgattacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctaggga 140  Q
    |||||| || ||||||||| | | ||| ||| ||||| ||||||||||| ||||| | ||||| |||||||||| ||   |||  ||||||||  |||||    
T  28130621 tggaagatgtcttcttaatgggcgaagccatggtacggttacattctgggaaaatatggatcaaattcggtatgccatcaagcatcatttttttgaggga 28130522  T
Q  141 ttcaagcttgagatcttggccaaatatgtatttcagcttatcacaactttttattgtgatggatattagtgccggacatttctgaaacaccgagagaaac 240  Q
      |||| |||| ||||| |||||||||||| | |||||||||||||||||| ||||||||||||  |||||  |||   |  |||      ||| |||||    
T  28130521 accaagtttgacatctttgccaaatatgtactgcagcttatcacaacttttaattgtgatggattctagtgttggaagatcatga---ggagagtgaaac 28130425  T
Q  241 ggaagtattaatttaaaacttggacatttctcaatactaataacttccagtttctgaaacattaagccttgacttgtg 318  Q
    |||||||||||||  |  |||||||| |||| |||||||| ||||| || ||||||||||||| |||| |||||||||    
T  28130424 ggaagtattaattcgattcttggacacttcttaatactaagaactttcaatttctgaaacattgagccatgacttgtg 28130347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 17748738 - 17748935
Alignment:
Q  7 gattattcttgttgctcagaagcatctccaaaaatggaaggtggcttcttaatcgacaaagacattgtacgattacattctggaaaaatgtcgatcagat 106  Q
    |||| ||||||| |||  ||||||| |||| | ||||||| ||  | |||||| |  |||||||| |||||||||||||| || ||||||||||||| ||    
T  17748738 gatttttcttgtggctgggaagcatatccagatatggaagatgcttccttaatggcgaaagacatggtacgattacattcagggaaaatgtcgatcaaat 17748837  T
Q  107 tcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaatatgtatttcagcttatcacaactttttattgtgatggat 204  Q
    |||||||| ||   ||||  | || ||  |||||  |||| |||||||||||| ||||||||||||||| ||||||||||  || |||||||||||||    
T  17748838 tcggtatgccatgaagcttgaattgtttgagggaaccaagtttgagatcttggtcaaatatgtatttcaccttatcacaatgttctattgtgatggat 17748935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 19050058 - 19050255
Alignment:
Q  7 gattattcttgttgctcagaagcatctccaaaaatggaaggtggcttcttaatcgacaaagacattgtacgattacattctggaaaaatgtcgatcagat 106  Q
    |||| ||||||| |||  ||||||| |||| | ||||||| ||  | |||||| |  |||||||| |||||||||||||| || ||||||||||||| ||    
T  19050058 gattgttcttgtggcttggaagcatatccagatatggaagatgcttccttaatggcgaaagacatggtacgattacattcagggaaaatgtcgatcaaat 19050157  T
Q  107 tcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaatatgtatttcagcttatcacaactttttattgtgatggat 204  Q
    |||||||| ||   ||||  | || ||  |||||  |||| |||||||||||| ||||||||||||||| ||||||||||  || |||||||||||||    
T  19050158 tcggtatgccatgaagcttgaattgtttgagggaaccaagtttgagatcttggtcaaatatgtatttcaccttatcacaatgttctattgtgatggat 19050255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 318
Target Start/End: Complemental strand, 28048101 - 28047811
Alignment:
Q  25 gaagcatctccaaaaatggaaggtggcttcttaatcgacaaagacattgtacgattacattctggaaaaatgtcgatcagattcggtatgtcactgagct 124  Q
    |||| ||||||| ||||||||| || | ||||||| ||||||||||||||| ||||||||||| | |||||||| || | ||| ||||   ||   |||     
T  28048101 gaagtatctccagaaatggaagatgacctcttaatggacaaagacattgtaggattacattcttggaaaatgtcaatgaaatttggtaaaccatcaagcc 28048002  T
Q  125 ccattttttctagggattcaagcttgagatcttggccaaatatgtatttcagcttatcacaactttttattgtgatggatattagtgccggacatttctg 224  Q
     ||||| || ||  ||  |||  |||| ||||| ||||||||||||||||||||||||||||||||  ||| ||||||||  |||||| |||   |  ||    
T  28048001 tcatttcttttaaagaaccaaatttgacatctttgccaaatatgtatttcagcttatcacaactttcaattttgatggattctagtgctggaagatcatg 28047902  T
Q  225 aaacaccgagagaaacggaagtattaatttaaaacttggacatttctcaatactaataacttccagtttctgaaacattaagccttgacttgtg 318  Q
    |    | ||  ||||||||||||||| || ||  |||||||| |||| |||||||| ||| | || ||||||||||||| | ||||||||||||    
T  28047901 a---gcagattgaaacggaagtattatttcaattcttggacacttcttaatactaagaacattcaatttctgaaacattgaaccttgacttgtg 28047811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 315
Target Start/End: Original strand, 28471950 - 28472029
Alignment:
Q  236 gaaacggaagtattaatttaaaacttggacatttctcaatactaataacttccagtttctgaaacattaagccttgactt 315  Q
    |||||||||||||||||| ||  |||||||| |||| |||||||| ||||| |||||||||||||||| |||| ||||||    
T  28471950 gaaacggaagtattaattcaattcttggacacttcttaatactaagaactttcagtttctgaaacattgagccatgactt 28472029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 315
Target Start/End: Original strand, 28491991 - 28492070
Alignment:
Q  236 gaaacggaagtattaatttaaaacttggacatttctcaatactaataacttccagtttctgaaacattaagccttgactt 315  Q
    |||||||||||||||||| ||  |||||||| |||| |||||||| ||||| |||||||||||||||| |||| ||||||    
T  28491991 gaaacggaagtattaattcaattcttggacacttcttaatactaagaactttcagtttctgaaacattgagccatgactt 28492070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 315
Target Start/End: Original strand, 28512972 - 28513051
Alignment:
Q  236 gaaacggaagtattaatttaaaacttggacatttctcaatactaataacttccagtttctgaaacattaagccttgactt 315  Q
    |||||||||||||||||| ||  |||||||| |||| |||||||| ||||| |||||||||||||||| |||| ||||||    
T  28512972 gaaacggaagtattaattcaattcttggacacttcttaatactaagaactttcagtttctgaaacattgagccatgactt 28513051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 204
Target Start/End: Complemental strand, 27963374 - 27963244
Alignment:
Q  74 tacgattacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaatatgtattt 173  Q
    |||||||||||| ||| ||||||||||| | |||||||| | |||  ||||||| || ||  |||||  |||| |  | || || |||||||||||||||    
T  27963374 tacgattacattttgggaaaatgtcgattaaattcggtaagccaccaagctccaattgtttgagggaaccaagttcaacatttttgccaaatatgtattt 27963275  T
Q  174 cagcttatcacaactttttattgtgatggat 204  Q
    ||||||||||||||||  ||||||| |||||    
T  27963274 cagcttatcacaacttgctattgtggtggat 27963244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 27910352 - 27910291
Alignment:
Q  143 caagcttgagatcttggccaaatatgtatttcagcttatcacaactttttattgtgatggat 204  Q
    |||| |||| ||||| |||||||||||||||||||||||||||||| |  ||||||||||||    
T  27910352 caagtttgacatctttgccaaatatgtatttcagcttatcacaactatcaattgtgatggat 27910291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 204
Target Start/End: Original strand, 27463825 - 27463963
Alignment:
Q  66 agacattgtacgattacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaat 165  Q
    |||||| ||| | ||||||||||| ||||| || |||| ||| |||||| ||   |||| |||| |||| |||||  ||||   || || || |||||||    
T  27463825 agacatggtatggttacattctgggaaaatatcaatcaaatttggtatgccatcaagcttcattgtttcaagggaaccaagtgggacatttttgccaaat 27463924  T
Q  166 atgtatttcagcttatcacaactttttattgtgatggat 204  Q
    |||||||| ||||||||||||||| ||||| ||||||||    
T  27463925 atgtatttaagcttatcacaacttcttattctgatggat 27463963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 318
Target Start/End: Complemental strand, 27910262 - 27910180
Alignment:
Q  236 gaaacggaagtattaatttaaaacttggacatttctcaatactaataacttccagtttctgaaacattaagccttgacttgtg 318  Q
    |||||||||||||||||| ||  ||||||||  | | |||||||| ||||| |||||||| ||||||| |||| |||||||||    
T  27910262 gaaacggaagtattaattcaattcttggacaactataaatactaagaactttcagtttcttaaacattgagccatgacttgtg 27910180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 318
Target Start/End: Complemental strand, 28079887 - 28079801
Alignment:
Q  232 gagagaaacggaagtattaatttaaaacttggacatttctcaatactaataacttccagtttctgaaacattaagccttgacttgtg 318  Q
    ||||||||||||||||| |||| ||    |||||| |||| |||||||| ||| |||||||||||||| ||| |||| |||||||||    
T  28079887 gagagaaacggaagtataaattcaagttctggacacttcttaatactaagaacctccagtttctgaaatattgagccgtgacttgtg 28079801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 321
Target Start/End: Complemental strand, 11409342 - 11409185
Alignment:
Q  161 caaatatgtatttcagcttatcacaactttttattgtgatggatattagtgccggacatttctgaaacaccgagagaaacggaagtattaatttaaaact 260  Q
    |||||||||||||||||  |||||||||||| ||||||||||||  |||||| ||| |  ||   | ||  |||||||  ||||||||||||| ||   |    
T  11409342 caaatatgtatttcagcaaatcacaacttttcattgtgatggattctagtgctgga-agatcaccagca--gagagaagtggaagtattaattcaatttt 11409246  T
Q  261 tggacatttctcaatactaataacttccagtttctgaaacattaagccttgacttgtgatg 321  Q
    |||||| |||| ||| |||| || ||||||||||||||||| | |||| ||||||| ||||    
T  11409245 tggacacttcttaatcctaagaatttccagtttctgaaacaatgagccatgacttgcgatg 11409185  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 26211865 - 26211909
Alignment:
Q  156 ttggccaaatatgtatttcagcttatcacaactttttattgtgat 200  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||    
T  26211865 ttggccaaatatgtatttcagcttgtcacaacattttattctgat 26211909  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 26239072 - 26239116
Alignment:
Q  156 ttggccaaatatgtatttcagcttatcacaactttttattgtgat 200  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||    
T  26239072 ttggccaaatatgtatttcagcttgtcacaacattttattttgat 26239116  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 317
Target Start/End: Complemental strand, 28178510 - 28178425
Alignment:
Q  232 gagagaaacggaagtattaatttaaaacttggacatttctcaatactaataacttccagtttctgaaacattaagccttgacttgt 317  Q
    |||||||||||||||||||||| ||  || |||||  |||||| | ||| |||||  |||||| |||||||| |||| ||||||||    
T  28178510 gagagaaacggaagtattaattcaattctcggacagctctcaacaataagaacttttagtttcggaaacattgagccatgacttgt 28178425  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 28512898 - 28512943
Alignment:
Q  159 gccaaatatgtatttcagcttatcacaactttttattgtgatggat 204  Q
    ||||||||||||||||||||||| |||||| |  ||||||||||||    
T  28512898 gccaaatatgtatttcagcttattacaactatcaattgtgatggat 28512943  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 211
Target Start/End: Original strand, 9329560 - 9329694
Alignment:
Q  77 gattacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaatatgtatttcag 176  Q
    ||||||||| ||| ||||||||||||| ||| |||||| ||   | ||||| |  ||| || ||  |||| |||| |||||  ||||||||||| |||||    
T  9329560 gattacattatgggaaaatgtcgatcaaatttggtatgccatcaaactccaatgattcgagagaaccaagtttgacatcttcaccaaatatgtaattcag 9329659  T
Q  177 cttatcacaactttttattgtgatggatattagtg 211  Q
    ||||||||||||||||||| |||||||| ||||||    
T  9329660 cttatcacaactttttattatgatggattttagtg 9329694  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 9329928 - 9329978
Alignment:
Q  268 ttctcaatactaataacttccagtttctgaaacattaagccttgacttgtg 318  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  9329928 ttctcaatactaataacttccagtttcttaaacattgagccttgacttgtg 9329978  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 211
Target Start/End: Original strand, 9383343 - 9383477
Alignment:
Q  77 gattacattctggaaaaatgtcgatcagattcggtatgtcactgagctccattttttctagggattcaagcttgagatcttggccaaatatgtatttcag 176  Q
    ||||||||| ||| ||||||||||||| ||| |||||| ||   | ||||| |  ||| || ||  |||| |||| |||||  ||||||||||| |||||    
T  9383343 gattacattatgggaaaatgtcgatcaaatttggtatgccatcaaactccaatgattcgagagaaccaagtttgacatcttcaccaaatatgtaattcag 9383442  T
Q  177 cttatcacaactttttattgtgatggatattagtg 211  Q
    ||||||||||||||||||| |||||||| ||||||    
T  9383443 cttatcacaactttttattatgatggattttagtg 9383477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 9383711 - 9383761
Alignment:
Q  268 ttctcaatactaataacttccagtttctgaaacattaagccttgacttgtg 318  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  9383711 ttctcaatactaataacttccagtttcttaaacattgagccttgacttgtg 9383761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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