View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_high_24 (Length: 304)
Name: NF1460_high_24
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 3923383 - 3923654
Alignment:
| Q |
19 |
gacacatgataaccaccattcaaagaaatcctcaaatgaatcttactagcaaacttcacctcccttgcattctcaataattccaggcctattaagatcca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3923383 |
gacacatgataaccaccattcaaagaaatcctcaaatgaatcttactagcaaacttcacctcccttgcattctcaataattccaggcctattaagatcca |
3923482 |
T |
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| Q |
119 |
cccatctatcatctgcaggtacatcatcaaatcttaaatccacatcgttcgaattattcaaattagttgtatatgtacccaaactcacattcacatgatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3923483 |
cccatctatcatctgcaggtacatcatcaaatcttatatccacatcgttcgaattattcaaattagttgtatatgtacccaaactcacattcacatgatc |
3923582 |
T |
|
| Q |
219 |
agctaatcttacttgctcaacgctcaagacaagttcttcatcgaaaggctcttgtgtaacaaacatcaaatc |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3923583 |
agctaatcttacttgctcaacgctcaagacaagttcttcatcgaaaggctcttgtgtaacaaacatcaaatc |
3923654 |
T |
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