View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1460_high_43 (Length: 238)
Name: NF1460_high_43
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_high_43 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 13885963 - 13886171
Alignment:
| Q |
17 |
agtactacttatttctaatcataccagggaaggtaagaagatcaggatctccaatgtaaaagtcaaacttgtctttatctttgtcaaagataagtctctc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13885963 |
agtactacttatttctaatcataccagggaaggtaagaagatcaggatctccaatgtaaaagtcaaacttgtctttatctttgtcaaagataagtctctc |
13886062 |
T |
|
| Q |
117 |
atcttcattgctcctcaatatgatgaagtaagggactcttatatatggaggatcattgataggatcaacaaaaattggaacacctaatgaatttacacca |
216 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13886063 |
atcttcattgctcctcagtatgatgaagtaagggactcttatatatggaggatcattgataggatcaacaaaaattggaacacctaatgaatttacacca |
13886162 |
T |
|
| Q |
217 |
ttcttattc |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
13886163 |
ttcttattc |
13886171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 14026088 - 14026296
Alignment:
| Q |
17 |
agtactacttatttctaatcataccagggaaggtaagaagatcaggatctccaatgtaaaagtcaaacttgtctttatctttgtcaaagataagtctctc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14026088 |
agtactacttatttctaatcataccagggaaggtaagaagatcaggatctccaatgtaaaagtcaaacttgtctttatctttgtcaaagataagtctctc |
14026187 |
T |
|
| Q |
117 |
atcttcattgctcctcaatatgatgaagtaagggactcttatatatggaggatcattgataggatcaacaaaaattggaacacctaatgaatttacacca |
216 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14026188 |
atcttcattgctcctcagtatgatgaagtaagggactcttatatatggaggatcattgataggatcaacaaaaattggaacacctaatgaatttacacca |
14026287 |
T |
|
| Q |
217 |
ttcttattc |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
14026288 |
ttcttattc |
14026296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 27 - 225
Target Start/End: Original strand, 7685962 - 7686160
Alignment:
| Q |
27 |
atttctaatcataccagggaaggtaagaagatcaggatctccaatgtaaaagtcaaacttgtctttatctttgtcaaagataagtctctcatcttcattg |
126 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
7685962 |
atttgtaatcgtaccagggaaggtaagaagatcaggatctccaacgtaaaagtcaaacttgtctttatctttgtcaaagataagtctctcatcctcgtta |
7686061 |
T |
|
| Q |
127 |
ctcctcaatatgatgaagtaagggactcttatatatggaggatcattgataggatcaacaaaaattggaacacctaatgaatttacaccattcttattc |
225 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
7686062 |
ctcctcaatatgatgaagtaagggattcttatatatggaagatcattgataggatcaacgaaaattggaacgcccaatgaatttacaccattcttattc |
7686160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University