View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1460_high_46 (Length: 234)

Name: NF1460_high_46
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1460_high_46
NF1460_high_46
[»] chr6 (1 HSPs)
chr6 (18-219)||(13441499-13441700)
[»] chr5 (1 HSPs)
chr5 (18-219)||(32784671-32784872)
[»] chr4 (2 HSPs)
chr4 (18-218)||(49351404-49351604)
chr4 (18-201)||(49340057-49340240)
[»] chr7 (2 HSPs)
chr7 (29-102)||(29603300-29603373)
chr7 (29-102)||(29749921-29749994)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 13441499 - 13441700
Alignment:
Q  18 gctttcgtgaggcctcacattcaaaatcatcgattacatcttcggcatcgtagaagacccgcttaatctgtttcagccattcacgtagttcattgttctt 117  Q
    ||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  13441499 gcttttgtaaggcttcacattcaaaatcatcgattacatcttcggcatcgtagaagacccgcttaatctgtttcagccattcacctagttcattgttctg 13441598  T
Q  118 ccattgcttttgttcagcgtccaacaacactgctttgacaggtgagacagtgtttttgatttcttgaagatcgtcgtagacaccgaacgctagagaagct 217  Q
    ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||    
T  13441599 ccattgcctttgttcagcgtccaacaacactgctttgacgagtgagacagtgttttttatttcttgaagaacgtcgtagacaccaaacgctagagaagct 13441698  T
Q  218 tt 219  Q
    ||    
T  13441699 tt 13441700  T

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Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 32784671 - 32784872
Alignment:
Q  18 gctttcgtgaggcctcacattcaaaatcatcgattacatcttcggcatcgtagaagacccgcttaatctgtttcagccattcacgtagttcattgttctt 117  Q
    |||||||  ||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| || |||| |||||     
T  32784671 gctttcgcaaggcctcgcactcaaaatcatcgattacatcttcggcatcatagaagacccgcttaatctgtttcaaccattcacgcagctcatggttctg 32784770  T
Q  118 ccattgcttttgttcagcgtccaacaacactgctttgacaggtgagacagtgtttttgatttcttgaagatcgtcgtagacaccgaacgctagagaagct 217  Q
    ||||||| |||||||||||||||||||||| |||||||   |||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||    
T  32784771 ccattgcgtttgttcagcgtccaacaacacggctttgatgagtgagacagtgtttttgatttcttgaagattgtcgtagacaccgagcgttagagaagct 32784870  T
Q  218 tt 219  Q
    ||    
T  32784871 tt 32784872  T

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Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 49351604 - 49351404
Alignment:
Q  18 gctttcgtgaggcctcacattcaaaatcatcgattacatcttcggcatcgtagaagacccgcttaatctgtttcagccattcacgtagttcattgttctt 117  Q
    |||||||  ||||||||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||     
T  49351604 gctttcgcaaggcctcacattcgaaatcatctataacatcttcggcatcgtagaagacgcgcttaatctgtttcaaccattcacgtagctcattgttctg 49351505  T
Q  118 ccattgcttttgttcagcgtccaacaacactgctttgacaggtgagacagtgtttttgatttcttgaagatcgtcgtagacaccgaacgctagagaagct 217  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||| | |||||| | ||  | ||||||||||    
T  49351504 ccattgcttttgttcagcgtccaacaacacggctttgacaagtgagacagtttttttgatttcttgaagatccttgtagacgctgagggatagagaagct 49351405  T
Q  218 t 218  Q
    |    
T  49351404 t 49351404  T

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Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 49340240 - 49340057
Alignment:
Q  18 gctttcgtgaggcctcacattcaaaatcatcgattacatcttcggcatcgtagaagacccgcttaatctgtttcagccattcacgtagttcattgttctt 117  Q
    |||||||  ||||||||||||| |||||||| || |||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||||||     
T  49340240 gctttcgcaaggcctcacattcgaaatcatctataacatcttcggcatcgtagaaaacacggttaatctgtttcagccattcacgtagctcattgttctg 49340141  T
Q  118 ccattgcttttgttcagcgtccaacaacactgctttgacaggtgagacagtgtttttgatttcttgaagatcgtcgtagacacc 201  Q
    |||||||||||||||||| || || ||||| ||||||||  |||||||| ||||||| ||||||| ||||||||| ||||||||    
T  49340140 ccattgcttttgttcagcatctaataacacggctttgacgagtgagacaatgttttttatttcttaaagatcgtcatagacacc 49340057  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 29603300 - 29603373
Alignment:
Q  29 gcctcacattcaaaatcatcgattacatcttcggcatcgtagaagacccgcttaatctgtttcagccattcacg 102  Q
    ||||| || |||||||||| |||||||||||| |||||||||||||| || || ||||||| ||||||||||||    
T  29603300 gcctcgcactcaaaatcattgattacatcttctgcatcgtagaagacacgtttgatctgttgcagccattcacg 29603373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 29749994 - 29749921
Alignment:
Q  29 gcctcacattcaaaatcatcgattacatcttcggcatcgtagaagacccgcttaatctgtttcagccattcacg 102  Q
    ||||| || |||||||||| |||||||||||| |||||||||||||| || || ||||||| ||||||||||||    
T  29749994 gcctcgcactcaaaatcattgattacatcttctgcatcgtagaagacacgtttgatctgttgcagccattcacg 29749921  T

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