View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1460_high_47 (Length: 232)
Name: NF1460_high_47
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_high_47 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 1982171 - 1982371
Alignment:
| Q |
18 |
ggtggtgccttcggcggtggcgttgaagtggtgttgtcatgtggtttcttaaaaggtgttactcttagacactaagtttcttcttcatgtggctcaactt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1982171 |
ggtggtgccttcggcggtggcgttgaagtggtgttgtcatgtggtttcttaaaaggcgttactcttagacactaagtttcttcttcatgtggctcaactt |
1982270 |
T |
|
| Q |
118 |
ctttttcctcaagactctcctctttcaaattttctttgaatttttcaagcttctggaagatttttgtgcatgctattgtgagagcatgttgggaaccttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1982271 |
ctttttcctcaagactctcctctttcaaattttctttgaatttttcaagcttctggaagatttttgtgcatgctattgtgagagcatgttgggaaccttt |
1982370 |
T |
|
| Q |
218 |
g |
218 |
Q |
| |
|
| |
|
|
| T |
1982371 |
g |
1982371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 218
Target Start/End: Original strand, 25839962 - 25840137
Alignment:
| Q |
43 |
aagtggtgttgtcatgtggtttcttaaaaggtgttactcttagacactaagtttcttcttcatgtggctcaacttctttttcctcaagactctcctcttt |
142 |
Q |
| |
|
|||| ||| ||||||||| || |||| |||||||||| ||||||||| |||| ||||||| ||||| ||| ||| ||||| ||| |||||||||||| |
|
|
| T |
25839962 |
aagtcgtgctgtcatgtgtttgtttaagaggtgttactattagacactgagttgcttcttcgtgtggttcaccttattttttctcggcactctcctcttt |
25840061 |
T |
|
| Q |
143 |
caaattttctttgaatttttcaagcttctggaagatttttgtgcatgctattgtgagagcatgttgggaacctttg |
218 |
Q |
| |
|
|||||||||||| |||||||||| ||||| ||||||||||| ||| |||||| ||||| ||||||||| ||||| |
|
|
| T |
25840062 |
caaattttcttttaatttttcaaacttctcgaagatttttgcgcaggctattttgagatattgttgggaagctttg |
25840137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University