View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_high_5 (Length: 489)
Name: NF1460_high_5
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 12565503 - 12565985
Alignment:
| Q |
1 |
gacatttttactatagatctcatatttactccaatagtaattgcataaatacacatcacatgtctttcattcaacactagtcaacactttagatgcaata |
100 |
Q |
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| T |
12565503 |
gacatttttactatagatctcatatttactccaatagtaattgcataaatacacatcacatgccttccattcaacactagtcaacactttagatgcaata |
12565602 |
T |
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| Q |
101 |
gagtagttatggaatgttcatgaatgactatgactctttaatgcaaagcttgcttcaattttggaaggcaaaaaatgcaatactcttttgaatcaattga |
200 |
Q |
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| T |
12565603 |
gagtagttatgaaatgttcatgaatgactatgactttttaatgtaaagcttgcttcaattttggaaggcaaaaaatgcaatactcttttgaatgaattgc |
12565702 |
T |
|
| Q |
201 |
tgattttcctttcgaatcagactaagctatagaaaatttgtctgtagcatcggcttttttctcgttttaccatcatttaatcaaacacaggtaaaagttc |
300 |
Q |
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| T |
12565703 |
tgattttcctttcgaatcagactaagatatagaaaatttgatcgtagcatcggcttttttctcgttttaccatcatttaatcaaacacaggtaaaagttc |
12565802 |
T |
|
| Q |
301 |
agagtactcccttctacattttactcaacatttgatcattagcttattttactcaaatgttagctgctagctc----tcg---------tatgttttcac |
387 |
Q |
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| T |
12565803 |
agagtactcccttctacattttactcaacatttggtcattaacttatttcactcgaaggttagtaatttactcaacatcggcttttttctatgttttcac |
12565902 |
T |
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| Q |
388 |
atgctggtatttcttttgaattacaaatgttagtaattttagcattatcctgaggatgaaggtcgaattctcgacctccaagg |
470 |
Q |
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| T |
12565903 |
atgctggtatttcttttgaattacaaatgttagtaattttagcattatcctgaggatgaaggtcgaactctcgacctccaagg |
12565985 |
T |
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