View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_high_53 (Length: 207)
Name: NF1460_high_53
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_high_53 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 46 - 189
Target Start/End: Complemental strand, 24305140 - 24304997
Alignment:
| Q |
46 |
aataataacttaatgttatcatccaaaattaattattttgacttcttaaaggtcttacaattatcctcgtaataaaataatatatgtaatactttctcaa |
145 |
Q |
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| T |
24305140 |
aataataacttaatgtcatcatccaaaataaattattttgacttcttaaaggtcttacaattatcctcgtaataaaataatatatgtaatattttctcaa |
24305041 |
T |
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| Q |
146 |
gatccaatgaaataaatgaagaccaattattctgcatcgatgtt |
189 |
Q |
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| T |
24305040 |
gatccaatgaaataaatgaagaccaattattcagcatcgatgtt |
24304997 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 24755049 - 24754997
Alignment:
| Q |
100 |
ttacaattatcctcgtaataaaataatatatgtaatactttctcaagatccaa |
152 |
Q |
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| T |
24755049 |
ttacaaatatcctcataataaaataaaatatgtaatattttctcaagatccaa |
24754997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 12373908 - 12373858
Alignment:
| Q |
99 |
cttacaattatcctcgtaataaaataatatatgtaatactttctcaagatc |
149 |
Q |
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| T |
12373908 |
cttacaattatcctcaaaataaaataaaatatgtaattttttctcaagatc |
12373858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 12333167 - 12333114
Alignment:
| Q |
99 |
cttacaattatcctcgtaataaaataatatatgtaatactttctcaagatccaa |
152 |
Q |
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| T |
12333167 |
cttataattatcctcacaataaaataaaatatgtaatgttttctcaagatccaa |
12333114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 24760514 - 24760461
Alignment:
| Q |
99 |
cttacaattatcctcgtaataaaataatatatgtaatactttctcaagatccaa |
152 |
Q |
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| T |
24760514 |
cttacaattattttcataagaaaataaaatatgtaatattttctcaagatccaa |
24760461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 24843879 - 24843842
Alignment:
| Q |
99 |
cttacaattatcctcgtaataaaataatatatgtaata |
136 |
Q |
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| T |
24843879 |
cttacaattatcctcataataaaataaaatatgtaata |
24843842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 16652639 - 16652595
Alignment:
| Q |
97 |
gtcttacaattatcctcgtaataaaataatatatgtaatactttc |
141 |
Q |
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| T |
16652639 |
gtcttacaattatcttcataataaaataaaatatgtaatattttc |
16652595 |
T |
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