View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1460_high_7 (Length: 450)
Name: NF1460_high_7
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_high_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 15 - 437
Target Start/End: Original strand, 1078409 - 1078831
Alignment:
| Q |
15 |
atgtgtaatcatatatagggattcttatttatagacaattgtgtaataccattttttaacatcgataaaagtgaaagtttatttactttctcatgtagct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1078409 |
atgtgtaatcatatatagggattcttatttatagacaattgtgtaataccattttttaacatcgataaaagtgaaagtttatttactttctcatgtagct |
1078508 |
T |
|
| Q |
115 |
tttatgttgtatttcttctgtggaatggttgcatcacccatcattcaaattattaaatcattgaatcacagacatttttcaataatcacagacacaaatg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | |
|
|
| T |
1078509 |
tttatgttgtatttcttctgtggaatggttgcatcacccatcattcaaattattaaatcattgaatcatagacatttttcaataatcacagacataaagg |
1078608 |
T |
|
| Q |
215 |
ttattgcctagtagaaccaggttgattcatgaaagtgtgttaaacaagcacaaaatgtcttcatctctactactatttaatttaacgcatttgaggggaa |
314 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1078609 |
ttgttgcctagtagaaccaggttgattcatgaaagtgtgttaaacaagcacaaaatgtcttcatctctactactatttaatttaacgaatttgaggggaa |
1078708 |
T |
|
| Q |
315 |
catgtggatttgtatttgaccctaaaacatgtgagttgcaattttcttgttcttgttctgaattggttattgtagatatagacaaaattttattccgtca |
414 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1078709 |
catgtggatttgtatttgaccctgaaacatgtgagttgcaattttcttgttcttgttctgaattggttattgtagatatagacaaaattttattccgtca |
1078808 |
T |
|
| Q |
415 |
ttgtcattattatgcatagtttc |
437 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1078809 |
ttgtcattattatgcatagtttc |
1078831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 367
Target Start/End: Complemental strand, 5707867 - 5707503
Alignment:
| Q |
15 |
atgtgtaatcatatatagggattcttatttatagacaattgtgtaataccattttttaacatcgataaaagtgaaagtttatttactttctcatgtagct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5707867 |
atgtgtaatcatatatagggattcttatttatagaccaatatgtaataccattttttaacatcgataaaagtgaaagtttatttactttctcatgtagct |
5707768 |
T |
|
| Q |
115 |
tttatgttgtatttcttctgtggaatggttgcatcacccatcat---tcaaattattaaatcattgaatcacagaca----------tttttcaataatc |
201 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| |||| |||||||| |
|
|
| T |
5707767 |
tttaagttgtatttcttctatggaatggttgcatcatccatcatcattcaaattattaaatcattgaatcacaaacagaaatgctaattttccaataatc |
5707668 |
T |
|
| Q |
202 |
acagacacaaatgttattgcctagtagaaccaggttgattcatgaaagtgtgttaaacaagcacaaaatgtcttcatctctactactatttaatttaacg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5707667 |
acagacacaaatgttattgcctagtagaaccacgttgattcatgaaagtgtgttaaactagcacaaaatgtcttcatatctactactatttaatttaacg |
5707568 |
T |
|
| Q |
302 |
catttgaggggaacatgtggatttgtatttgaccctaaaacatgtgagttgcaattttcttgttct |
367 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||| | ||||||||||| |||||||||||| |||| |
|
|
| T |
5707567 |
catttgagggg-acatatggatttgtatttgaccatgaaacatgtgagctgcaattttctttttct |
5707503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 367
Target Start/End: Original strand, 2887556 - 2887918
Alignment:
| Q |
15 |
atgtgtaatcatatatagggattcttatttatagacaattgtgtaataccattttttaacatcgataaaagtgaaagtttatttactttctcatgtagct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2887556 |
atgtgtaatcatatatagggattcttatttatagaccaatatgtaataccatattttaacatcgataaaagtgaaagtttatttactctctcatgtagct |
2887655 |
T |
|
| Q |
115 |
tttatgttgtatttcttctgtggaatggttgcatcacc---catcattcaaattattaaatcattgaatcacagac----------atttttcaataatc |
201 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
2887656 |
tttaagttgtatttcttctatggaatggttgcatcatccatcatcattcaaattattaaatcattgaatcacaaacagaaatgctaattttccaataatc |
2887755 |
T |
|
| Q |
202 |
acagacacaaatgttattgcctagtagaaccaggttgattcatgaaagtgtgttaaacaagcacaaaatgtcttcatctctactactatttaatttaacg |
301 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
2887756 |
acag-gacaaatgttattgcctagtagaaccacgttgattcatgaaagtgtgttaaactagcacaaaat-tcttcatatctactactatttaatttaacg |
2887853 |
T |
|
| Q |
302 |
catttgaggggaacatgtggatttgtatttgaccctaaaacatgtgagttgcaattttcttgttct |
367 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||| | ||||||||||| |||||||||||| |||| |
|
|
| T |
2887854 |
catttgagggg-acatatggatttgtatttgaccatgaaacatgtgagctgcaattttctttttct |
2887918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 367
Target Start/End: Complemental strand, 16184492 - 16184130
Alignment:
| Q |
15 |
atgtgtaatcatatatagggattcttatttatagacaattgtgtaataccattttttaacatcgataaaagtgaaagtttatttactttctcatgtagct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16184492 |
atgtgtaatcatatatagggattcttatttatagaccaatatgtaataccatattttaacatcgataaaagtgaaagtttatttactctctcatgtagct |
16184393 |
T |
|
| Q |
115 |
tttatgttgtatttcttctgtggaatggttgcatcacc---catcattcaaattattaaatcattgaatcacagac----------atttttcaataatc |
201 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
16184392 |
tttaagttgtatttcttctatggaatggttgcatcatccatcatcattcaaattattaaatcattgaatcacaaacagaaatgctaattttccaataatc |
16184293 |
T |
|
| Q |
202 |
acagacacaaatgttattgcctagtagaaccaggttgattcatgaaagtgtgttaaacaagcacaaaatgtcttcatctctactactatttaatttaacg |
301 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
16184292 |
acag-gacaaatgttattgcctagtagaaccacgttgattcatgaaagtgtgttaaactagcacaaaat-tcttcatatctactactatttaatttaacg |
16184195 |
T |
|
| Q |
302 |
catttgaggggaacatgtggatttgtatttgaccctaaaacatgtgagttgcaattttcttgttct |
367 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||| | ||||||||||| |||||||||||| |||| |
|
|
| T |
16184194 |
catttgagggg-acatatggatttgtatttgaccatgaaacatgtgagctgcaattttctttttct |
16184130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 273 - 437
Target Start/End: Complemental strand, 28068634 - 28068477
Alignment:
| Q |
273 |
cttcatctctactactatttaatttaacgcatttgaggggaacatgtggatttgtatttgaccctaaaacatgtgagttgcaattttcttgttcttgttc |
372 |
Q |
| |
|
|||| ||| |||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||| ||| |
|
|
| T |
28068634 |
cttcttctgtactactatt-aatttaaatcatttgaggggaacatgtggatttgtatttaaccctgaaacatgtgagctgcaattt------tcttattc |
28068542 |
T |
|
| Q |
373 |
tgaattggttattgtagatatagacaaaattttattccgtcattgtcattattatgcatagtttc |
437 |
Q |
| |
|
||| ||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
28068541 |
tgatttggttattatagatatatacaaaattgtattctgtcattgtcattattatgcatagtttc |
28068477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University