View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_1 (Length: 762)
Name: NF1460_low_1
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 33 - 589
Target Start/End: Complemental strand, 30621992 - 30621441
Alignment:
| Q |
33 |
tgcgtttgtgcctatttaaagataaccttctatatttacttttcaaatagaaaaagaatcaattgaatttaattgcattgatttttaatttaattcattg |
132 |
Q |
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| T |
30621992 |
tgcgtttgtgcctatttaaagatgaccttctatatttacttttcaaatagaaaaagaatcaattgaatttaattgcattgatttttaatttaattcattg |
30621893 |
T |
|
| Q |
133 |
aaatatgtttttggtgcagtaagaaggtgttcaataagctccataatnnnnnnnnttcaaacgaacacttttaagcaattaatgatagtaagctaaataa |
232 |
Q |
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| T |
30621892 |
aaatatgtttttggtgtagtaagaaggtgttcaataagctccataataaaaaat-ttcaaatgaacacttttaagcaattagtgatagtaagctaaataa |
30621794 |
T |
|
| Q |
233 |
gctaattaatctcagccacgtatgctagagtacaacacgtacaaataagagaataattcctttttcgaaagttagagtcggtgttgagacttgatgccag |
332 |
Q |
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| T |
30621793 |
gctaattaatctcagccacgtatgctagagtacaacacgtacaaataagagaataattcctttttcgaaagttagagtcggtgttgagatttgatgccag |
30621694 |
T |
|
| Q |
333 |
accagtnnnnnnnnnnnggagaataagtagggaggcagaagcatattcttctcgaatatttgcacttgcagtaactgtaattttcctttgccaataaaat |
432 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
30621693 |
accagtaaaaaaaaataggagaataattagggaggcagaagcatattcttctcgaatatttgcactttcagtaactgtaattttcctttgccaatgaaat |
30621594 |
T |
|
| Q |
433 |
ttcttcttttgcctatatatcattttccactgcctttaannnnnnnnncactaaagccaaatcctttgattcatctttttctttctctctcttgtagttc |
532 |
Q |
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|| ||||||| |||||||||||||||||||||||||| | |||||||||||| | |||| |||||||||||||||||||||||||||||||| |
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| T |
30621593 |
tttttctttttcctatatatcattttccactgcctttcatttttttttcactaaagccaatttcttttattcatctttttctttctctctcttgtagttc |
30621494 |
T |
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| Q |
533 |
caacgacttctgtgttaattatctttcaggtaacaatcttgcattctcactttctac |
589 |
Q |
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| T |
30621493 |
ca---acttctgtgttaattatc-ttcaggtaacaatcttgcattctcactatctac |
30621441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 638 - 751
Target Start/End: Complemental strand, 30621405 - 30621291
Alignment:
| Q |
638 |
catcatgtgaccattacgtccctccaaatgcattatatatatatgttgtat---tctccatctcaacatcaacatgtattacatttaatattaatttgca |
734 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30621405 |
catcatgtgaccattacgtccctccaaatgcattatatatat--gttgtataattctccatctcaacatcaacatgtattacatttaatattaatttgca |
30621308 |
T |
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| Q |
735 |
ctgcatttctgtttcat |
751 |
Q |
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|| |||||||||||||| |
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| T |
30621307 |
ctacatttctgtttcat |
30621291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 44 - 157
Target Start/End: Original strand, 28044970 - 28045082
Alignment:
| Q |
44 |
ctatttaaagataaccttctatatttacttttcaaatagaaaaagaatcaattgaatttaattgcattgatttttaatttaattcattgaaatatgtttt |
143 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||| ||||||||||||| |
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| T |
28044970 |
ctatttaaagatgatattctatatttacttttcaaatagaaaaagaatcaattaaatttaattgcattgaattttaaattaattca-tgaaatatgtttt |
28045068 |
T |
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| Q |
144 |
tggtgcagtaagaa |
157 |
Q |
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||||| ||||||| |
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| T |
28045069 |
tggtgtggtaagaa |
28045082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 17542991 - 17543053
Alignment:
| Q |
61 |
tctatatttacttttcaaatagaaaaagaatcaattgaatttaattgcattgatttttaattt |
123 |
Q |
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|||||||| || ||| |||| || |||||||||| ||||||||||||||||||| |||||||| |
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| T |
17542991 |
tctatattaacattttaaattgacaaagaatcaaatgaatttaattgcattgatgtttaattt |
17543053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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