View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_10 (Length: 475)
Name: NF1460_low_10
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 30338821 - 30338769
Alignment:
| Q |
10 |
aagaatatacgtttgatctatttagttaagtaaataagaaaaatacatcaatt |
62 |
Q |
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| T |
30338821 |
aagaatatacgtttgatctatttagttaactaaataagaaaaatacatcaatt |
30338769 |
T |
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Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 415 - 458
Target Start/End: Complemental strand, 30338723 - 30338680
Alignment:
| Q |
415 |
agactgacaacaaatttgccataaaccttcaaagaatctcattt |
458 |
Q |
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| T |
30338723 |
agactgacaacaaatttgccataaaccttcaaagaatctcattt |
30338680 |
T |
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