View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_11 (Length: 461)
Name: NF1460_low_11
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 446
Target Start/End: Original strand, 34519689 - 34520113
Alignment:
| Q |
15 |
atactacctgtttagttactatagcggaattttgtcaatccaaacatgcattaaatgtatgtaactaagaagtgatgaatgcatctttgcataatactat |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34519689 |
atactacctgtttagttactatagcggaattttgtcaatccaaacatgcattaaatgta----actaagaagtgatgaatgcatctttgcataatactat |
34519784 |
T |
|
| Q |
115 |
gaaagagttttgtttgttaggattttattcttggtgaaattttgtttgttaggattgttctgtaatgattacaataacctcactgattcannnnnnnnnn |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| |
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| T |
34519785 |
gaaagagttttgtttgttaggattttattcttggtgaaattttgtttgttaggattgttctgt---gattacagtaacctcgctgattcattttcctttt |
34519881 |
T |
|
| Q |
215 |
nnnnnnnncactcaaacttgatggttgttgatgtttgctacattcagctgggattttattaaagatggtcccaatctagtgaaggacatggaccgtttgg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34519882 |
tgttttttcactcaaacttgatggttgttgatgtttgctacattcagctgggattttattaaagatggtcccaatctagtgaaggacatggaccgtttgg |
34519981 |
T |
|
| Q |
315 |
atgcattttataagggattgaccacttgggctggatgggttgatgctaatgttgaccctaccaaaactaaagtcttctttcaaggaatttcccctactca |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34519982 |
atgcattttataagggattgaccacttgggctggatgggttgatgctaatgttgaccctaccaaaactaaagtcttctttcaaggaatttcccctactca |
34520081 |
T |
|
| Q |
415 |
ttatcagtaagtaactcttatatatgctaatt |
446 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
34520082 |
ttatcagtaagtaactcttatatatgctaatt |
34520113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 263 - 442
Target Start/End: Original strand, 34507741 - 34507920
Alignment:
| Q |
263 |
tgggattttattaaagatggtcccaatctagtgaaggacatggaccgtttggatgcattttataagggattgaccacttgggctggatgggttgatgcta |
362 |
Q |
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||||||||||| | |||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
34507741 |
tgggattttatcagggatggttctaatctagtgagggacatggaccgtttggatgcattttataagggattgaccacttgggctggttgggttgatgcaa |
34507840 |
T |
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| Q |
363 |
atgttgaccctaccaaaactaaagtcttctttcaaggaatttcccctactcattatcagtaagtaactcttatatatgct |
442 |
Q |
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| ||||||||||| ||||||||| ||||||||||||||||||||||||||||| | |||||||||||| |||||||||| |
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| T |
34507841 |
acgttgaccctactaaaactaaactcttctttcaaggaatttcccctactcataacaagtaagtaactcctatatatgct |
34507920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 290 - 427
Target Start/End: Complemental strand, 4686535 - 4686398
Alignment:
| Q |
290 |
ctagtgaaggacatggaccgtttggatgcattttataagggattgaccacttgggctggatgggttgatgctaatgttgaccctaccaaaactaaagtct |
389 |
Q |
| |
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||||| ||| ||||||||||||| | |||| ||||||||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||| |
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| T |
4686535 |
ctagtcaagaacatggaccgtttagtggcatacaataagggattgacgacttgggctaaatgggttgatctcaatgttgatcctaccaaaactaaagtct |
4686436 |
T |
|
| Q |
390 |
tctttcaaggaatttcccctactcattatcagtaagta |
427 |
Q |
| |
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|||||||||| ||||| |||||||||||| ||||||| |
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| T |
4686435 |
tctttcaaggcatttctcctactcattatatgtaagta |
4686398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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